BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0375000 Os09g0375000|J080316J15
(110 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G74030.1 | chr1:27839465-27841901 REVERSE LENGTH=478 178 4e-46
AT2G36530.1 | chr2:15321081-15323786 REVERSE LENGTH=445 142 3e-35
AT2G29560.1 | chr2:12646635-12649694 FORWARD LENGTH=476 117 1e-27
>AT1G74030.1 | chr1:27839465-27841901 REVERSE LENGTH=478
Length = 477
Score = 178 bits (452), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 86/110 (78%), Positives = 95/110 (86%)
Query: 1 MISSKSNINMDCKMTKIYSTVFQVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNF 60
++++ I K + + +VNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNF
Sbjct: 368 LVTNPKRIAEAIKKQSCNALLLKVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNF 427
Query: 61 IADLAVGLASGQIKTGAPCRSERLAKYNQLLRIEMELGNVRYAGEAFRSP 110
IADL+VGLASGQIKTGAPCRSERL+KYNQLLRIE ELGNVRYAGEAFRSP
Sbjct: 428 IADLSVGLASGQIKTGAPCRSERLSKYNQLLRIEEELGNVRYAGEAFRSP 477
>AT2G36530.1 | chr2:15321081-15323786 REVERSE LENGTH=445
Length = 444
Score = 142 bits (358), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/91 (76%), Positives = 77/91 (84%), Gaps = 1/91 (1%)
Query: 21 VFQVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLAVGLASGQIKTGAPCR 80
+ +VNQIG+VTESI+A SK AGWGVM SHRSGETED FIADLAVGL++GQIKTGAPCR
Sbjct: 350 LLKVNQIGSVTESIEAVKMSKKAGWGVMTSHRSGETEDTFIADLAVGLSTGQIKTGAPCR 409
Query: 81 SERLAKYNQLLRIEMELGN-VRYAGEAFRSP 110
SERLAKYNQLLRIE ELG+ YAG FR P
Sbjct: 410 SERLAKYNQLLRIEEELGSEAIYAGVNFRKP 440
>AT2G29560.1 | chr2:12646635-12649694 FORWARD LENGTH=476
Length = 475
Score = 117 bits (293), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/89 (62%), Positives = 70/89 (78%), Gaps = 1/89 (1%)
Query: 21 VFQVNQIGTVTESIQAALDSKAAGWGVMVSHRSGETEDNFIADLAVGLASGQIKTGAPCR 80
+ +VNQIGTVTE+I+ ++ A WGV+ SHR GETED+FI+DL+VGLA+G IK GAPCR
Sbjct: 384 LLKVNQIGTVTEAIEVVKMARDAQWGVVTSHRCGETEDSFISDLSVGLATGVIKAGAPCR 443
Query: 81 SERLAKYNQLLRIEMELGN-VRYAGEAFR 108
ER KYNQLLRIE ELG+ YAGE ++
Sbjct: 444 GERTMKYNQLLRIEEELGDQAVYAGEDWK 472
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.316 0.129 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 1,867,189
Number of extensions: 58635
Number of successful extensions: 141
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 3
Length of query: 110
Length of database: 11,106,569
Length adjustment: 79
Effective length of query: 31
Effective length of database: 8,940,705
Effective search space: 277161855
Effective search space used: 277161855
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 104 (44.7 bits)