FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os09g0318600

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 4.48 (0.0327) R2 : 0.000729
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0398 (0.0689) R2dN8 : 0.000941 R2N8 : 0.000729
σ : 0.617
deviance : 174.47
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
145.31 0.566 4.41 0.901 0.525 0.736 0.143 -0.545 0.287 13.3 25.1 42 -- --
145.64 0.562 4.42 0.823 0.516 0.783 0.319 -- 0.27 13.4 24.81 50 -- --
145.36 0.562 4.41 0.918 0.524 0.736 -- -0.62 0.293 13.2 25.1 41 -- --
146.02 0.563 4.42 0.83 0.522 0.79 -- -- 0.264 13.1 24.7 43 -- --
158.67 0.587 4.42 0.942 -- 0.35 -- -1.28 0.247 -- 24.7 281 -- --
154.63 0.583 4.46 0.631 0.38 -- 0.397 -- 0.116 13.6 -- -- -- --
155.03 0.583 4.46 0.642 0.381 -- -- -- 0.117 13 -- -- -- --
160.8 0.591 4.44 0.748 -- 0.473 -- -- 0.194 -- 24.3 258 -- --
162.47 0.594 4.46 -- 0.462 0.482 -- -- 0.133 13.1 24.6 13 -- --
164.06 0.599 4.46 0.628 -- -- -- -- 0.109 -- -- -- -- --
165.91 0.603 4.47 -- 0.371 -- -- -- 0.0452 12.9 -- -- -- --
173.72 0.614 4.47 -- -- 0.207 -- -- 0.07 -- 24.2 45 -- --
174.47 0.617 4.48 -- -- -- -- -- 0.0398 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 136.91 temperature 10.0 30 > th dose dependent rect. 11 18
5 139.04 temperature 10.0 30 > th dose dependent rect. 9 20
13 139.94 temperature 15.0 90 > th dose independent rect. 9 20
15 140.09 humidity 50.0 30 > th dose dependent rect. 5 13
17 140.14 temperature 10.0 30 > th dose dependent rect. 20 9
24 140.39 temperature 25.0 720 > th dose independent rect. 15 6
25 140.39 atmosphere 1010.0 30 < th dose independent rect. 11 18
28 140.53 radiation 1.0 270 > th dose independent rect. 8 11
41 140.57 radiation 1.0 10 > th dose dependent rect. 17 16
47 140.68 radiation 40.0 30 < th dose independent rect. 5 13
50 140.84 precipitation 0.1 270 < th dose independent rect. 6 23
52 140.84 precipitation 0.1 270 < th dose dependent rect. 6 23
54 140.86 temperature 25.0 720 > th dose independent rect. 16 3
55 140.86 radiation 1.0 10 > th dose dependent rect. 5 4
70 140.99 temperature 20.0 30 > th dose independent rect. 11 18
73 141.02 atmosphere 1010.0 30 < th dose independent rect. 20 9
92 141.15 wind 9.0 30 < th dose dependent rect. 11 18
95 141.22 atmosphere 995.0 30 > th dose dependent rect. 5 15
103 141.39 temperature 25.0 720 > th dose independent rect. 11 13
116 141.55 temperature 25.0 720 > th dose independent rect. 13 11
117 141.56 radiation 40.0 30 < th dose independent rect. 5 15
121 141.60 temperature 25.0 720 > th dose independent rect. 11 10
122 141.62 temperature 25.0 720 > th dose independent sin 17 NA
129 141.63 humidity 90.0 270 < th dose independent rect. 8 19
135 141.70 temperature 20.0 30 > th dose independent rect. 18 11
137 141.73 humidity 60.0 30 > th dose independent rect. 5 13
143 141.80 atmosphere 995.0 270 > th dose independent rect. 6 23
163 141.97 atmosphere 1015.0 90 < th dose independent rect. 9 20
164 141.97 atmosphere 995.0 30 > th dose dependent rect. 5 13
170 142.00 atmosphere 995.0 90 > th dose dependent rect. 5 4
172 142.01 atmosphere 995.0 30 > th dose dependent rect. 5 6
179 142.06 atmosphere 1010.0 270 < th dose independent rect. 5 1
180 142.06 atmosphere 995.0 30 > th dose independent rect. 11 18
182 142.07 wind 9.0 10 < th dose dependent rect. 20 9
183 142.07 temperature 15.0 30 > th dose dependent rect. 18 11
186 142.08 atmosphere 1010.0 30 < th dose independent rect. 5 6
187 142.08 humidity 50.0 90 > th dose independent rect. 9 20
189 142.09 atmosphere 1000.0 270 > th dose independent rect. 5 1
192 142.10 temperature 10.0 270 > th dose dependent rect. 18 10
197 142.12 atmosphere 1000.0 90 > th dose independent rect. 9 20
202 142.15 precipitation 0.1 90 < th dose independent rect. 9 20
203 142.15 precipitation 0.1 90 < th dose dependent rect. 9 20
206 142.18 wind 7.0 270 < th dose independent rect. 5 1
208 142.18 temperature 10.0 270 > th dose independent rect. 5 1
210 142.18 temperature 30.0 270 < th dose independent rect. 5 1
211 142.18 humidity 50.0 270 > th dose independent rect. 5 1
216 142.18 radiation 20.0 270 < th dose independent rect. 5 1
219 142.18 wind 9.0 30 < th dose independent rect. 11 18
220 142.18 temperature 10.0 270 > th dose independent rect. 6 23
221 142.18 temperature 30.0 270 < th dose dependent rect. 5 1
222 142.18 humidity 50.0 30 > th dose dependent rect. 5 15
228 142.20 radiation 40.0 30 < th dose independent rect. 5 7
230 142.20 precipitation 0.1 30 < th dose independent rect. 11 18
232 142.20 precipitation 0.1 30 < th dose dependent rect. 11 18
233 142.21 precipitation 0.1 270 < th dose independent rect. 5 1
234 142.21 humidity 50.0 270 > th dose independent rect. 7 21
235 142.21 precipitation 0.1 270 < th dose dependent rect. 5 1
242 142.25 atmosphere 1010.0 30 < th dose independent rect. 18 11
245 142.25 wind 9.0 90 < th dose independent rect. 9 20
251 142.28 radiation 1.0 720 > th dose independent rect. 17 1
259 142.30 temperature 20.0 720 > th dose dependent rect. 16 5
262 142.33 wind 9.0 30 < th dose independent rect. 5 6
263 142.33 temperature 10.0 30 > th dose independent rect. 5 6
265 142.33 humidity 50.0 30 > th dose independent rect. 5 6
266 142.33 atmosphere 995.0 30 > th dose independent rect. 5 6
271 142.33 temperature 30.0 90 < th dose independent rect. 9 20
273 142.34 wind 9.0 30 < th dose dependent rect. 18 11
275 142.35 humidity 60.0 30 > th dose independent rect. 5 15
278 142.35 atmosphere 1005.0 90 > th dose dependent rect. 7 1
285 142.37 precipitation 0.1 30 < th dose independent rect. 5 6
286 142.37 atmosphere 995.0 270 > th dose dependent rect. 5 1
287 142.37 precipitation 0.1 30 < th dose dependent rect. 5 6
289 142.38 temperature 20.0 30 > th dose independent rect. 20 9
291 142.39 atmosphere 1000.0 90 > th dose independent rect. 5 4
292 142.40 radiation 40.0 270 < th dose dependent rect. 5 1
295 142.41 wind 1.0 10 > th dose independent rect. 5 6
297 142.41 temperature 20.0 720 > th dose dependent rect. 17 1
304 142.44 wind 9.0 90 < th dose independent rect. 5 4
305 142.44 temperature 10.0 90 > th dose independent rect. 5 4
307 142.44 temperature 30.0 90 < th dose independent rect. 5 4
308 142.44 humidity 50.0 90 > th dose independent rect. 5 4
310 142.44 atmosphere 1015.0 90 < th dose independent rect. 5 4
311 142.44 precipitation 0.1 90 < th dose independent rect. 5 4
314 142.44 precipitation 0.1 90 < th dose dependent rect. 5 4
316 142.45 wind 1.0 270 > th dose independent rect. 5 1
326 142.48 humidity 50.0 270 > th dose dependent rect. 5 1
329 142.49 temperature 30.0 30 < th dose independent rect. 5 6
356 142.54 precipitation 0.1 720 < th dose independent rect. 2 17
358 142.54 precipitation 0.1 720 < th dose dependent rect. 2 17
362 142.56 atmosphere 1000.0 270 > th dose independent rect. 7 21
364 142.57 radiation 30.0 10 < th dose dependent sin 10 NA
409 142.65 wind 5.0 30 < th dose independent rect. 18 11
413 142.66 wind 9.0 270 < th dose dependent rect. 5 1
422 142.68 radiation 40.0 30 < th dose independent rect. 5 10
425 142.70 temperature 10.0 1440 > th dose independent rect. 6 6
428 142.70 atmosphere 995.0 1440 > th dose independent rect. 6 6
430 142.70 temperature 10.0 1440 > th dose independent rect. 12 18
446 142.71 humidity 50.0 270 > th dose independent rect. 6 23
477 142.75 temperature 15.0 10 > th dose dependent rect. 11 14
490 142.80 wind 5.0 30 < th dose independent rect. 20 9
513 142.83 wind 1.0 10 > th dose independent rect. 5 4
516 142.83 precipitation 0.1 270 < th dose independent rect. 7 21
519 142.83 precipitation 0.1 270 < th dose dependent rect. 7 21
531 142.86 humidity 50.0 30 > th dose independent rect. 11 18
547 142.90 atmosphere 1015.0 30 < th dose dependent rect. 11 18
550 142.91 precipitation 0.1 720 < th dose independent rect. 15 14
551 142.91 wind 1.0 10 > th dose dependent rect. 5 4
552 142.91 precipitation 0.1 720 < th dose dependent rect. 15 14
557 142.92 temperature 30.0 90 < th dose dependent rect. 5 4
567 142.97 temperature 10.0 1440 > th dose independent rect. 6 4
570 142.97 atmosphere 995.0 1440 > th dose independent rect. 6 4
571 142.97 atmosphere 1015.0 1440 < th dose independent rect. 6 4
572 142.97 precipitation 0.1 30 < th dose independent rect. 20 9
574 142.97 temperature 10.0 1440 > th dose independent rect. 10 20
579 142.97 precipitation 0.1 30 < th dose dependent rect. 20 9
591 142.99 humidity 50.0 30 > th dose dependent rect. 5 8
606 143.01 radiation 40.0 90 < th dose independent rect. 5 4
621 143.05 atmosphere 1005.0 10 > th dose dependent rect. 7 2
629 143.07 temperature 30.0 30 < th dose independent rect. 20 9
630 143.07 humidity 50.0 30 > th dose independent rect. 20 9
633 143.07 atmosphere 995.0 30 > th dose independent rect. 20 9
634 143.07 radiation 1.0 30 < th dose independent rect. 20 9
639 143.07 temperature 10.0 30 > th dose independent rect. 5 15
641 143.07 atmosphere 1015.0 30 < th dose independent rect. 5 15
643 143.07 radiation 30.0 30 < th dose dependent rect. 20 9
648 143.08 radiation 10.0 30 < th dose dependent rect. 20 9
653 143.09 temperature 25.0 270 < th dose independent rect. 13 19
692 143.16 wind 9.0 90 < th dose dependent rect. 5 4
696 143.17 temperature 30.0 30 < th dose independent rect. 11 18
698 143.17 wind 9.0 270 < th dose independent rect. 6 23
710 143.19 humidity 90.0 10 < th dose dependent rect. 6 3
719 143.20 radiation 1.0 10 > th dose dependent sin 11 NA
721 143.21 precipitation 0.1 30 < th dose independent rect. 5 15
723 143.21 precipitation 0.1 30 < th dose dependent rect. 5 15
724 143.22 radiation 1.0 270 < th dose independent rect. 5 1
736 143.22 wind 9.0 270 < th dose independent rect. 7 21
740 143.23 humidity 50.0 1440 > th dose independent rect. 6 4
749 143.23 temperature 30.0 270 < th dose dependent rect. 15 17
775 143.29 radiation 20.0 30 > th dose independent rect. 7 2
784 143.29 atmosphere 1015.0 720 < th dose independent rect. 17 10
803 143.31 temperature 10.0 30 > th dose dependent rect. 5 6
806 143.32 wind 1.0 90 > th dose independent rect. 9 20
824 143.33 wind 9.0 30 < th dose dependent rect. 5 6
829 143.34 atmosphere 995.0 30 > th dose independent rect. 5 15
837 143.35 wind 1.0 10 > th dose independent rect. 5 15
838 143.35 wind 9.0 30 < th dose independent rect. 5 15
848 143.37 atmosphere 1015.0 720 < th dose independent rect. 15 14
850 143.38 humidity 90.0 720 < th dose independent rect. 9 3
861 143.38 temperature 30.0 30 < th dose dependent rect. 5 13
866 143.40 temperature 10.0 1440 > th dose independent rect. 21 9
869 143.40 temperature 30.0 1440 < th dose independent rect. 21 9
873 143.40 humidity 50.0 1440 > th dose independent rect. 21 9
879 143.40 atmosphere 995.0 1440 > th dose independent rect. 21 9
880 143.40 radiation 20.0 1440 < th dose independent rect. 21 9
889 143.40 temperature 25.0 720 < th dose independent rect. 13 12
890 143.40 temperature 10.0 1440 > th dose independent rect. 6 15
893 143.40 wind 3.0 270 < th dose dependent rect. 4 3
895 143.41 precipitation 0.1 720 < th dose independent sin 15 NA
898 143.41 precipitation 0.1 720 < th dose dependent sin 15 NA
997 143.47 wind 5.0 30 < th dose dependent rect. 13 16