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Os09g0297000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Ferrochelatase II, chloroplast precursor (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme synthetase).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 11 (0.0166) R2 : 0.264
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.448 (0.035) R2dN8 : 0.341 R2N8 : 0.264
σ : 0.313
deviance : 45.02
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
22.86 0.225 11.1 0.224 0.355 -0.177 -0.193 4.17 0.452 5.74 30 717 -- --
24.34 0.23 11 0.65 0.38 0.191 0.0558 -- 0.499 6.05 29.6 1874 -- --
22.94 0.223 11.1 0.237 0.356 -0.173 -- 4.02 0.456 5.84 30 716 -- --
24.33 0.23 11 0.678 0.375 0.203 -- -- 0.507 5.97 29.6 1886 -- --
27.8 0.246 11.1 0.32 -- -0.0169 -- 4.72 0.469 -- 30.22 589 -- --
25.62 0.237 11 0.625 0.407 -- 0.148 -- 0.51 6.13 -- -- -- --
25.67 0.237 11 0.626 0.408 -- -- -- 0.509 6.05 -- -- -- --
31.27 0.26 11 0.707 -- 0.308 -- -- 0.54 -- 29.01 2016 -- --
35.86 0.279 11 -- 0.407 0.0615 -- -- 0.441 5.95 29.31 1878 -- --
34.29 0.274 11 0.638 -- -- -- -- 0.518 -- -- -- -- --
36 0.281 11 -- 0.417 -- -- -- 0.439 5.98 -- -- -- --
43.65 0.309 11 -- -- 0.142 -- -- 0.456 -- 29 1968 -- --
45.02 0.313 11 -- -- -- -- -- 0.448 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 22.20 temperature 15.0 720 > th dose dependent rect. 7 11
2 22.22 temperature 15.0 720 > th dose dependent rect. 6 13
16 22.37 atmosphere 995.0 90 > th dose dependent rect. 12 11
21 22.41 temperature 15.0 720 > th dose dependent sin 0 NA
47 22.54 temperature 30.0 720 < th dose independent rect. 7 10
49 22.54 wind 9.0 43200 > th dose dependent rect. 17 14
54 22.55 radiation 1.0 720 < th dose dependent rect. 4 14
56 22.56 humidity 70.0 270 > th dose independent rect. 17 14
66 22.57 temperature 30.0 720 < th dose dependent rect. 5 13
67 22.58 temperature 30.0 720 < th dose independent rect. 5 14
81 22.62 wind 1.0 14400 < th dose dependent rect. 2 1
82 22.62 precipitation 0.1 43200 > th dose dependent rect. 17 2
95 22.64 radiation 1.0 720 < th dose dependent rect. 19 23
97 22.65 temperature 10.0 720 > th dose dependent rect. 7 4
105 22.67 temperature 30.0 720 < th dose independent sin 0 NA
116 22.70 temperature 30.0 720 < th dose independent rect. 20 23
121 22.71 wind 9.0 43200 > th dose independent rect. 17 15
122 22.71 precipitation 0.1 43200 > th dose dependent rect. 14 4
131 22.72 wind 9.0 43200 < th dose independent rect. 17 14
132 22.72 temperature 30.0 720 < th dose independent rect. 13 23
143 22.73 temperature 30.0 720 < th dose dependent sin 0 NA
154 22.74 radiation 1.0 1440 < th dose dependent rect. 17 18
170 22.77 wind 9.0 43200 > th dose dependent rect. 17 7
175 22.77 temperature 25.0 720 > th dose dependent rect. 23 19
192 22.80 temperature 30.0 720 < th dose independent rect. 23 23
203 22.81 temperature 25.0 4320 > th dose dependent rect. 5 1
209 22.82 wind 1.0 14400 < th dose independent rect. 2 2
219 22.83 temperature 30.0 720 > th dose independent sin 2 NA
220 22.83 atmosphere 1000.0 270 > th dose independent rect. 11 12
221 22.83 wind 7.0 720 < th dose independent rect. 15 20
247 22.85 precipitation 0.1 43200 < th dose independent rect. 17 2
248 22.85 temperature 30.0 720 > th dose independent rect. 9 9
265 22.85 atmosphere 1000.0 90 > th dose independent rect. 11 23
266 22.85 precipitation 0.1 43200 < th dose dependent rect. 17 2
287 22.86 temperature 25.0 4320 < th dose independent rect. 5 1
288 22.86 precipitation 0.1 43200 > th dose independent rect. 17 2
289 22.86 wind 9.0 43200 < th dose independent rect. 17 8
290 22.86 wind 9.0 43200 < th dose independent rect. 20 9
292 22.86 temperature 30.0 720 > th dose independent rect. 15 23
303 22.87 temperature 30.0 720 < th dose independent no NA NA
304 22.87 temperature 25.0 4320 > th dose independent rect. 5 1
316 22.88 wind 9.0 43200 > th dose independent rect. 17 8
335 22.88 temperature 30.0 720 > th dose independent rect. 17 22
354 22.89 temperature 30.0 720 > th dose independent no NA NA
468 22.89 wind 9.0 43200 > th dose dependent rect. 19 10
509 22.91 wind 1.0 14400 < th dose independent rect. 10 1
510 22.91 wind 1.0 14400 > th dose independent rect. 2 2
529 22.92 temperature 30.0 720 > th dose independent rect. 9 6
543 22.93 wind 1.0 14400 > th dose independent rect. 10 1
546 22.93 wind 9.0 43200 > th dose independent rect. 20 8
560 22.93 temperature 30.0 270 < th dose independent rect. 17 14
568 22.93 wind 7.0 720 < th dose independent rect. 7 20
570 22.93 temperature 30.0 720 > th dose independent rect. 13 23
571 22.93 wind 9.0 43200 > th dose dependent sin 12 NA
590 22.94 wind 9.0 43200 < th dose independent rect. 19 6
594 22.94 temperature 25.0 720 < th dose independent rect. 3 12
598 22.94 temperature 30.0 720 < th dose dependent rect. 9 5
648 22.96 wind 9.0 43200 > th dose independent rect. 19 6
673 22.97 wind 9.0 43200 > th dose independent rect. 17 1
696 22.97 humidity 60.0 720 > th dose independent rect. 19 21
700 22.97 wind 9.0 43200 > th dose dependent rect. 19 6
714 22.98 temperature 15.0 720 > th dose independent rect. 19 4
744 22.99 humidity 60.0 720 > th dose independent rect. 11 4
752 22.99 radiation 1.0 1440 < th dose dependent sin 0 NA
768 22.99 temperature 25.0 720 > th dose dependent rect. 16 23
771 23.00 wind 7.0 720 < th dose independent rect. 15 4
776 23.00 atmosphere 1000.0 30 > th dose independent rect. 5 11
782 23.00 temperature 25.0 720 > th dose dependent no NA NA
804 23.00 temperature 25.0 720 > th dose dependent rect. 6 22
805 23.00 temperature 25.0 720 > th dose dependent rect. 3 23
819 23.01 atmosphere 995.0 720 > th dose independent rect. 11 20
834 23.01 radiation 1.0 1440 < th dose dependent rect. 6 18
887 23.03 radiation 1.0 720 < th dose independent rect. 4 14
923 23.04 humidity 60.0 720 > th dose independent rect. 11 12
949 23.05 wind 9.0 43200 > th dose independent sin 11 NA
955 23.05 wind 5.0 720 < th dose independent rect. 7 12
962 23.05 radiation 1.0 1440 < th dose dependent sin 11 NA
990 23.06 wind 9.0 43200 < th dose independent sin 11 NA