BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0297000 Os09g0297000|AK068174
         (482 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G26030.1  | chr5:9096675-9098752 FORWARD LENGTH=467            582   e-166
AT2G30390.2  | chr2:12951242-12953985 REVERSE LENGTH=523          461   e-130

>AT5G26030.1 | chr5:9096675-9098752 FORWARD LENGTH=467
          Length = 466

 Score =  582 bits (1499), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 294/455 (64%), Positives = 346/455 (76%), Gaps = 17/455 (3%)

Query: 29  SCGKATSTNLAICTKHEQNLHGNVKPSQLAASGSSYSVHRSPVLKQRQNLSARSTSADVY 88
           SC +  S +L  C   E++   ++    +   G S+   ++ V +Q     ARS + D  
Sbjct: 24  SCSQRNSLSLIQCDIKERSFGESMT---ITNRGLSF---KTNVFEQ-----ARSVTGDC- 71

Query: 89  TTFDENVRAVSSHA-AEEKVGVLLLNLGGPETLDDVQPFLFNLFADPDIIXXXXXXXXXX 147
            ++DE      SH  AE+K+GVLLLNLGGPETL+DVQPFL+NLFADPDII          
Sbjct: 72  -SYDETSAKARSHVVAEDKIGVLLLNLGGPETLNDVQPFLYNLFADPDIIRLPRPFQFLQ 130

Query: 148 XXXAKLISTFRAPKSKEGYASIGGGSPLRKITDEQXXXXXXXXXXXXXXXXIYVGMRYWY 207
              AK IS  RAPKSKEGYA+IGGGSPLRKITDEQ                +YVGMRYWY
Sbjct: 131 GTIAKFISVVRAPKSKEGYAAIGGGSPLRKITDEQADAIKMSLQAKNIAANVYVGMRYWY 190

Query: 208 PFTEEAIDQIKKDKITKLVVLPLYPQYSISTSGSSIRVLQNIVKEDSYFAGLPISIIESW 267
           PFTEEA+ QIKKDKIT+LVVLPLYPQYSIST+GSSIRVLQ++ ++D Y AG+P++II+SW
Sbjct: 191 PFTEEAVQQIKKDKITRLVVLPLYPQYSISTTGSSIRVLQDLFRKDPYLAGVPVAIIKSW 250

Query: 268 YQRDGYVKSMADLIEKELSIFSNPEEVMIFFSAHGVPLTYVTDAGDPYRDQMEDCIALIM 327
           YQR GYV SMADLIEKEL  FS+P+EVMIFFSAHGVP++YV +AGDPY+ QME+CI LIM
Sbjct: 251 YQRRGYVNSMADLIEKELQTFSDPKEVMIFFSAHGVPVSYVENAGDPYQKQMEECIDLIM 310

Query: 328 GELKSRGILNSHTLAYQSRVGPVQWLKPYTDEVLVELGQQGVKSLLAVPVSFVSEHIETL 387
            ELK+RG+LN H LAYQSRVGPVQWLKPYTDEVLV+LG+ GVKSLLAVPVSFVSEHIETL
Sbjct: 311 EELKARGVLNDHKLAYQSRVGPVQWLKPYTDEVLVDLGKSGVKSLLAVPVSFVSEHIETL 370

Query: 388 EEIDMEYKELALESGIENWGRVPALGCTSSFISDLADAVVEALPSASALVTKK--VDESD 445
           EEIDMEY+ELALESG+ENWGRVPALG T SFI+DLADAV+E+LPSA A+      VD  D
Sbjct: 371 EEIDMEYRELALESGVENWGRVPALGLTPSFITDLADAVIESLPSAEAMSNPNAVVDSED 430

Query: 446 SD-MDLMHYLSKMFFGSILAFVLLLSPRLISAFRN 479
           S+  D   Y+ KMFFGSILAFVLLLSP++  AFRN
Sbjct: 431 SESSDAFSYIVKMFFGSILAFVLLLSPKMFHAFRN 465



>AT2G30390.2 | chr2:12951242-12953985 REVERSE LENGTH=523
          Length = 522

 Score =  461 bits (1187), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/351 (63%), Positives = 267/351 (76%), Gaps = 10/351 (2%)

Query: 106 KVGVLLLNLGGPETLDDVQPFLFNLFADPDIIXXXXXXXXXXXXXAKLISTFRAPKSKEG 165
           K+GVLLLNLGGPETLDDVQPFLFNLFADPDII             A+ IS  RAPKSKEG
Sbjct: 100 KIGVLLLNLGGPETLDDVQPFLFNLFADPDIIRLPPVFQFLQKPLAQFISVARAPKSKEG 159

Query: 166 YASIGGGSPLRKITDEQXXXXXXXXXXXXXXXXIYVGMRYWYPFTEEAIDQIKKDKITKL 225
           YASIGGGSPLR ITD Q                +YVGMRYW+PFTEEAI+QIK+D ITKL
Sbjct: 160 YASIGGGSPLRHITDAQAEELRKCLWEKNVPAKVYVGMRYWHPFTEEAIEQIKRDGITKL 219

Query: 226 VVLPLYPQYSISTSGSSIRVLQNIVKEDSYFAGLPISIIESWYQRDGYVKSMADLIEKEL 285
           VVLPLYPQ+SISTSGSS+R+L+ I +ED Y   +  ++I SWYQR+GY+K+MA+LI+ EL
Sbjct: 220 VVLPLYPQFSISTSGSSLRLLERIFREDEYLVNMQHTVIPSWYQREGYIKAMANLIQSEL 279

Query: 286 SIFSNPEE----------VMIFFSAHGVPLTYVTDAGDPYRDQMEDCIALIMGELKSRGI 335
             F +P +          V+IFFSAHGVPL YV +AGDPY+ +ME+C+ LIM EL  R I
Sbjct: 280 GKFGSPNQTCFKPKYMLQVVIFFSAHGVPLAYVEEAGDPYKAEMEECVDLIMEELDKRKI 339

Query: 336 LNSHTLAYQSRVGPVQWLKPYTDEVLVELGQQGVKSLLAVPVSFVSEHIETLEEIDMEYK 395
            N++TLAYQSRVGPV+WLKPYT+E + ELG++GV++LLAVP+SFVSEHIETLEEID+EYK
Sbjct: 340 TNAYTLAYQSRVGPVEWLKPYTEEAITELGKKGVENLLAVPISFVSEHIETLEEIDVEYK 399

Query: 396 ELALESGIENWGRVPALGCTSSFISDLADAVVEALPSASALVTKKVDESDS 446
           ELAL+SGI+NWGRVPALG    FISDLADAVVE+LP   A+    ++   S
Sbjct: 400 ELALKSGIKNWGRVPALGTEPMFISDLADAVVESLPYVGAMAVSNLEARQS 450



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,677,805
Number of extensions: 377948
Number of successful extensions: 1044
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 1039
Number of HSP's successfully gapped: 2
Length of query: 482
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 380
Effective length of database: 8,310,137
Effective search space: 3157852060
Effective search space used: 3157852060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 114 (48.5 bits)