Os09g0133600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PAP fibrillin family protein.
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Os09g0133600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PAP fibrillin family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47.66 | 0.324 | 14 | 0.514 | 1.83 | -0.655 | 0.409 | 0.261 | 0.228 | 10.6 | 20.28 | 1586 | -- | -- |
| 47.82 | 0.322 | 14 | 0.496 | 1.84 | -0.692 | 0.426 | -- | 0.228 | 10.7 | 20.27 | 1560 | -- | -- |
| 48.36 | 0.324 | 14 | 0.522 | 1.83 | -0.657 | -- | 0.247 | 0.228 | 10.6 | 20.25 | 1586 | -- | -- |
| 48.48 | 0.324 | 14 | 0.487 | 1.83 | -0.698 | -- | -- | 0.222 | 10.6 | 20.25 | 1586 | -- | -- |
| 191.04 | 0.644 | 14.1 | 0.636 | -- | -1.14 | -- | 0.739 | 0.199 | -- | 26.1 | 755 | -- | -- |
| 57.32 | 0.355 | 14.1 | 0.186 | 1.83 | -- | 0.467 | -- | 0.0711 | 10.7 | -- | -- | -- | -- |
| 58.22 | 0.357 | 14.1 | 0.204 | 1.83 | -- | -- | -- | 0.0725 | 10.7 | -- | -- | -- | -- |
| 183.94 | 0.632 | 14 | 0.587 | -- | -1.4 | -- | -- | 0.502 | -- | 25.8 | 816 | -- | -- |
| 53.64 | 0.341 | 14.1 | -- | 1.82 | -0.485 | -- | -- | 0.131 | 10.6 | 20.3 | 1560 | -- | -- |
| 264.26 | 0.76 | 14.1 | 0.17 | -- | -- | -- | -- | 0.063 | -- | -- | -- | -- | -- |
| 59.32 | 0.36 | 14.1 | -- | 1.83 | -- | -- | -- | 0.0497 | 10.6 | -- | -- | -- | -- |
| 191.38 | 0.644 | 14 | -- | -- | -1.28 | -- | -- | 0.454 | -- | 25.58 | 800 | -- | -- |
| 265.02 | 0.76 | 14.1 | -- | -- | -- | -- | -- | 0.0442 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.61 | temperature | 20 | 90 | < th | dose independent | rect. | 13 | 12 |
| 3 | 40.79 | temperature | 20 | 90 | < th | dose independent | rect. | 15 | 10 |
| 9 | 41.21 | temperature | 25 | 90 | < th | dose dependent | rect. | 13 | 12 |
| 17 | 41.52 | temperature | 25 | 10 | < th | dose dependent | rect. | 13 | 13 |
| 42 | 42.01 | temperature | 20 | 90 | < th | dose independent | sin | 15 | NA |
| 98 | 42.73 | temperature | 20 | 90 | > th | dose independent | sin | 15 | NA |
| 105 | 42.80 | temperature | 25 | 10 | < th | dose dependent | sin | 15 | NA |
| 110 | 42.86 | temperature | 25 | 90 | < th | dose dependent | sin | 16 | NA |
| 264 | 44.27 | temperature | 20 | 270 | > th | dose independent | rect. | 14 | 11 |
| 336 | 44.84 | temperature | 20 | 90 | < th | dose independent | rect. | 21 | 4 |
| 483 | 45.67 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 1 |
| 549 | 45.90 | temperature | 20 | 90 | < th | dose independent | rect. | 22 | 1 |
| 609 | 46.17 | temperature | 15 | 10 | > th | dose dependent | sin | 13 | NA |
| 678 | 46.40 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 5 |
| 690 | 46.43 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 2 |
| 710 | 46.47 | temperature | 30 | 720 | < th | dose dependent | rect. | 12 | 3 |
| 713 | 46.49 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 5 |
| 734 | 46.54 | temperature | 20 | 1440 | > th | dose independent | rect. | 24 | 1 |
| 791 | 46.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 8 |
| 802 | 46.68 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 10 |
| 820 | 46.71 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 10 |
| 823 | 46.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 8 |
| 947 | 46.94 | temperature | 20 | 1440 | > th | dose independent | rect. | 22 | 18 |
| 948 | 46.94 | temperature | 20 | 1440 | < th | dose independent | rect. | 22 | 18 |