BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0133600 Os09g0133600|AK061477
         (241 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0133600  PAP fibrillin family protein                        486   e-138
Os10g0575700  PAP fibrillin family protein                        189   2e-48

>Os09g0133600 PAP fibrillin family protein
          Length = 241

 Score =  486 bits (1252), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 241/241 (100%), Positives = 241/241 (100%)

Query: 1   VTYYYTQRQRGAEPQEESSHGGVVVPQHALPLRASSETRAEVVELITQLEARNPTPAPTE 60
           VTYYYTQRQRGAEPQEESSHGGVVVPQHALPLRASSETRAEVVELITQLEARNPTPAPTE
Sbjct: 1   VTYYYTQRQRGAEPQEESSHGGVVVPQHALPLRASSETRAEVVELITQLEARNPTPAPTE 60

Query: 61  ALTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLAT 120
           ALTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLAT
Sbjct: 61  ALTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVEEISQTIDSENFTVQNCIKFSGPLAT 120

Query: 121 TSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSI 180
           TSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSI
Sbjct: 121 TSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLKGIFSSI 180

Query: 181 ENAASSVARTISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGSTLL 240
           ENAASSVARTISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGSTLL
Sbjct: 181 ENAASSVARTISGQPPLKIPIRTDNAESWLLTTYLDDELRISRGDGSSIFVLFKEGSTLL 240

Query: 241 Y 241
           Y
Sbjct: 241 Y 241



>Os10g0575700 PAP fibrillin family protein
          Length = 409

 Score =  189 bits (479), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 111/247 (44%), Positives = 151/247 (61%), Gaps = 38/247 (15%)

Query: 30  LPLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLP 89
           L  RASSE R EV+EL+TQLEA NPTP P +A  LL G WIL YT++S+L P+L  G+ P
Sbjct: 162 LGFRASSEVRGEVLELVTQLEATNPTPEPVQATHLLAGNWILIYTAYSELLPILAVGAAP 221

Query: 90  QLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKRVQ----------- 138
            L KV+EISQ ID+ + T+ N    S P A+ S S  A F+V+SP R++           
Sbjct: 222 -LFKVDEISQEIDTNSMTIVNASTISSPFASFSFSATASFDVQSPSRIEKLEMCIEIIEI 280

Query: 139 ------------------------IKFDEGIIGTPQLTDSIVLPEKFELFGQNIDLTPLK 174
                                   ++F EG    P+++ S+ LP + ++FGQ I L P++
Sbjct: 281 SDHQLSCANMYIDQTDMLMVIPMKVQFKEGSFQPPKISSSVDLPAEVDIFGQKISLGPVQ 340

Query: 175 GIFSSIENAASSVARTISGQPPLKIPIRTDN-AESWLLTTYLDDELRISRGDGSSIFVLF 233
            + + ++ A +S+A +ISGQPPLK+PI  +N A SWLLTTYLD +LRISRGDG  +F+L 
Sbjct: 341 QVLNPLQQAFASIAGSISGQPPLKLPIPGNNRARSWLLTTYLDKDLRISRGDG-GLFILV 399

Query: 234 KEGSTLL 240
           KEGS LL
Sbjct: 400 KEGSPLL 406



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.132    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,172,808
Number of extensions: 326539
Number of successful extensions: 576
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 576
Number of HSP's successfully gapped: 3
Length of query: 241
Length of database: 17,035,801
Length adjustment: 98
Effective length of query: 143
Effective length of database: 11,918,829
Effective search space: 1704392547
Effective search space used: 1704392547
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 154 (63.9 bits)