BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os09g0133600 Os09g0133600|AK061477
(241 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G22240.1 | chr4:11766090-11767227 REVERSE LENGTH=311 312 1e-85
AT4G04020.1 | chr4:1932161-1933546 FORWARD LENGTH=319 302 8e-83
AT2G35490.1 | chr2:14912309-14913797 REVERSE LENGTH=377 217 5e-57
AT5G09820.2 | chr5:3056090-3057380 REVERSE LENGTH=274 58 5e-09
>AT4G22240.1 | chr4:11766090-11767227 REVERSE LENGTH=311
Length = 310
Score = 312 bits (800), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 150/209 (71%), Positives = 180/209 (86%), Gaps = 1/209 (0%)
Query: 32 LRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLPQL 91
L ASSETRAE+ +LITQLE++NPTPAPTEAL LLNGKWILAYTSF LFPLL G +P L
Sbjct: 101 LSASSETRAEIGDLITQLESKNPTPAPTEALFLLNGKWILAYTSFVNLFPLLSRGIVP-L 159
Query: 92 VKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQL 151
+KV+EISQTIDS+NFTVQN ++F+GPL T S+STNAKFE+RSPKRVQIKF++G+IGTPQL
Sbjct: 160 IKVDEISQTIDSDNFTVQNSVRFAGPLGTNSISTNAKFEIRSPKRVQIKFEQGVIGTPQL 219
Query: 152 TDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTISGQPPLKIPIRTDNAESWLL 211
TDSI +PE E+ GQ IDL P++G+ +S+++ ASSVARTIS QPPLK + DNA+SWLL
Sbjct: 220 TDSIEIPEYVEVLGQKIDLNPIRGLLTSVQDTASSVARTISSQPPLKFSLPADNAQSWLL 279
Query: 212 TTYLDDELRISRGDGSSIFVLFKEGSTLL 240
TTYLD ++RISRGDG S+FVL KEGS LL
Sbjct: 280 TTYLDKDIRISRGDGGSVFVLIKEGSPLL 308
>AT4G04020.1 | chr4:1932161-1933546 FORWARD LENGTH=319
Length = 318
Score = 302 bits (774), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 147/209 (70%), Positives = 178/209 (85%), Gaps = 1/209 (0%)
Query: 32 LRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLPQL 91
L SS+TRAE+ ELITQLE++NPTPAP EAL LLNGKWILAYTSF LFPLL S + L
Sbjct: 109 LSVSSDTRAEISELITQLESKNPTPAPNEALFLLNGKWILAYTSFVGLFPLL-SRRIEPL 167
Query: 92 VKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQL 151
VKV+EISQTIDS++FTVQN ++F+GP +TTS STNAKFE+RSPKRVQIKF++G+IGTPQL
Sbjct: 168 VKVDEISQTIDSDSFTVQNSVRFAGPFSTTSFSTNAKFEIRSPKRVQIKFEQGVIGTPQL 227
Query: 152 TDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTISGQPPLKIPIRTDNAESWLL 211
TDSI +PE E+ GQ IDL P+KG+ +S+++ ASSVARTIS QPPLK + +DN +SWLL
Sbjct: 228 TDSIEIPESVEVLGQKIDLNPIKGLLTSVQDTASSVARTISNQPPLKFSLPSDNTQSWLL 287
Query: 212 TTYLDDELRISRGDGSSIFVLFKEGSTLL 240
TTYLD +LRISRGDG S++VL KEGS+LL
Sbjct: 288 TTYLDKDLRISRGDGGSVYVLIKEGSSLL 316
>AT2G35490.1 | chr2:14912309-14913797 REVERSE LENGTH=377
Length = 376
Score = 217 bits (552), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 110/211 (52%), Positives = 146/211 (69%), Gaps = 2/211 (0%)
Query: 30 LPLRASSETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLP 89
L +A SE RAEV+EL+ QLEA NPTPAP E LL+G W+L YT+FS+L PLL +GS P
Sbjct: 166 LGFKAGSEVRAEVLELVNQLEALNPTPAPLENPELLDGNWVLLYTAFSELIPLLAAGSTP 225
Query: 90 QLVKVEEISQTIDSENFTVQNCIKFSGPLATTSVSTNAKFEVRSPKRVQIKFDEGIIGTP 149
L+KV+ ISQ+ID+ N + N S P A S S A FEVRSP R+++ F EG + P
Sbjct: 226 -LLKVKSISQSIDTNNLIIDNSTTLSSPFADFSFSATASFEVRSPSRIEVSFKEGTLKPP 284
Query: 150 QLTDSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTISGQPPLKIPIRTDNAESW 209
+ S+ LPE +FGQ I L+ LK + +++ A++++R +SGQPPLK+P + SW
Sbjct: 285 VIKSSVDLPESVGVFGQQISLSLLKQSLNPLQDVAANISRALSGQPPLKLPFPGNRGSSW 344
Query: 210 LLTTYLDDELRISRGDGSSIFVLFKEGSTLL 240
LLTTYLD +LRISRGDG +FVL +EGS+LL
Sbjct: 345 LLTTYLDKDLRISRGDG-GLFVLAREGSSLL 374
>AT5G09820.2 | chr5:3056090-3057380 REVERSE LENGTH=274
Length = 273
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/200 (26%), Positives = 81/200 (40%), Gaps = 41/200 (20%)
Query: 36 SETRAEVVELITQLEARNPTPAPTEALTLLNGKWILAYTSFSQLFPLLGSGSLPQLVKVE 95
S+ + E+ L+ LE RNPTP PT L + G W L Y++ + L L V +
Sbjct: 106 SDKKTEIEGLVKLLECRNPTPEPTGELDKIGGCWKLIYSTITVLGSKRTKLGLRDFVSLG 165
Query: 96 EISQTIDSENFTVQNCIKFSG---PLATTSVSTNAKFEVRSPKRVQIKFDEGIIGTPQLT 152
++ Q ID + +KF L A F++ S V+I ++ I QL
Sbjct: 166 DLLQQIDIAQGKTVHVLKFDVRGLNLLDGEFRIVASFKISSKSSVEITYESSTIKPDQLM 225
Query: 153 DSIVLPEKFELFGQNIDLTPLKGIFSSIENAASSVARTISGQPPLKIPIRTDNAESWLLT 212
+ +F +N+DL L GIF N E
Sbjct: 226 N---------IFRKNMDL--LLGIF---------------------------NPEGLFEI 247
Query: 213 TYLDDELRISRGDGSSIFVL 232
+YLD++L++ R ++FVL
Sbjct: 248 SYLDEDLQVGRDGKGNVFVL 267
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.314 0.132 0.371
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,156,304
Number of extensions: 204996
Number of successful extensions: 411
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 410
Number of HSP's successfully gapped: 6
Length of query: 241
Length of database: 11,106,569
Length adjustment: 96
Effective length of query: 145
Effective length of database: 8,474,633
Effective search space: 1228821785
Effective search space used: 1228821785
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 110 (47.0 bits)