Os09g0123100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Tetratricopeptide-like helical domain containing protein.
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Os09g0123100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Tetratricopeptide-like helical domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 15.76 | 0.186 | 11.6 | 0.954 | 0.295 | -0.158 | 0.302 | -1.52 | 0.183 | 13.7 | 29.2 | 2057 | -- | -- |
| 16.62 | 0.19 | 11.7 | 0.705 | 0.324 | -0.196 | 0.299 | -- | 0.131 | 14.2 | 29.4 | 1612 | -- | -- |
| 16.1 | 0.187 | 11.6 | 0.95 | 0.293 | -0.169 | -- | -1.43 | 0.179 | 13.6 | 29.1 | 2047 | -- | -- |
| 16.43 | 0.189 | 11.7 | 0.644 | 0.291 | -0.256 | -- | -- | 0.133 | 14.1 | 29.74 | 6051 | -- | -- |
| 18.23 | 0.2 | 11.7 | 0.664 | -- | -0.298 | -- | -0.129 | 0.105 | -- | 29.09 | 1776 | -- | -- |
| 19.17 | 0.205 | 11.7 | 0.713 | 0.289 | -- | 0.301 | -- | 0.131 | 14.3 | -- | -- | -- | -- |
| 19.5 | 0.207 | 11.7 | 0.721 | 0.289 | -- | -- | -- | 0.133 | 14.2 | -- | -- | -- | -- |
| 18.25 | 0.2 | 11.7 | 0.646 | -- | -0.305 | -- | -- | 0.1 | -- | 29.09 | 1776 | -- | -- |
| 26.78 | 0.241 | 11.7 | -- | 0.27 | -0.375 | -- | -- | 0.0553 | 13.7 | 29.9 | 6308 | -- | -- |
| 24.47 | 0.231 | 11.7 | 0.709 | -- | -- | -- | -- | 0.126 | -- | -- | -- | -- | -- |
| 33.21 | 0.27 | 11.7 | -- | 0.275 | -- | -- | -- | 0.0523 | 14.1 | -- | -- | -- | -- |
| 27.55 | 0.245 | 11.7 | -- | -- | -0.357 | -- | -- | 0.0245 | -- | 27.7 | 1740 | -- | -- |
| 37.74 | 0.287 | 11.7 | -- | -- | -- | -- | -- | 0.047 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 15.49 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 7 | 2 |
| 2 | 15.61 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 5 | 13 |
| 5 | 15.61 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 5 | 13 |
| 6 | 15.62 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 5 | 13 |
| 10 | 15.65 | temperature | 25.0 | 720 | > th | dose dependent | rect. | 2 | 9 |
| 14 | 15.67 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 8 | 10 |
| 15 | 15.67 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 8 | 10 |
| 16 | 15.67 | temperature | 20.0 | 720 | > th | dose dependent | rect. | 5 | 6 |
| 19 | 15.67 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 8 | 10 |
| 23 | 15.68 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 7 | 4 |
| 37 | 15.70 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 3 | 12 |
| 44 | 15.72 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 19 | 1 |
| 54 | 15.73 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 19 | 1 |
| 65 | 15.74 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 21 | 1 |
| 67 | 15.74 | temperature | 15.0 | 720 | > th | dose dependent | sin | 3 | NA |
| 69 | 15.74 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 4 |
| 75 | 15.75 | temperature | 25.0 | 720 | > th | dose independent | rect. | 7 | 2 |
| 81 | 15.76 | temperature | 20.0 | 14400 | < th | dose independent | rect. | 21 | 1 |
| 82 | 15.76 | temperature | 20.0 | 14400 | > th | dose independent | rect. | 20 | 3 |
| 83 | 15.76 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 16 | 3 |
| 85 | 15.76 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 16 | 3 |
| 88 | 15.76 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 5 | 14 |
| 100 | 15.78 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 16 | 3 |
| 108 | 15.78 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 17 | 9 |
| 115 | 15.79 | temperature | 25.0 | 720 | > th | dose dependent | sin | 7 | NA |
| 117 | 15.79 | temperature | 30.0 | 720 | < th | dose dependent | rect. | 9 | 1 |
| 142 | 15.83 | precipitation | 0.1 | 4320 | < th | dose independent | rect. | 14 | 5 |
| 148 | 15.83 | precipitation | 0.1 | 4320 | < th | dose dependent | rect. | 14 | 5 |
| 153 | 15.83 | temperature | 15.0 | 720 | > th | dose dependent | rect. | 23 | 16 |
| 156 | 15.84 | precipitation | 0.1 | 4320 | > th | dose independent | rect. | 14 | 5 |
| 164 | 15.84 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 13 |
| 205 | 15.87 | temperature | 30.0 | 1440 | > th | dose independent | rect. | 13 | 1 |
| 218 | 15.88 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 16 | 1 |
| 257 | 15.89 | temperature | 25.0 | 270 | > th | dose dependent | rect. | 15 | 23 |
| 272 | 15.91 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 279 | 15.91 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 15 |
| 297 | 15.92 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 12 | 1 |
| 300 | 15.92 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 11 | 4 |
| 308 | 15.92 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 15 |
| 325 | 15.92 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 17 |
| 362 | 15.93 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 7 | 23 |
| 389 | 15.94 | temperature | 25.0 | 30 | > th | dose dependent | rect. | 7 | 19 |
| 394 | 15.94 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 23 | 21 |
| 397 | 15.94 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 21 | 23 |
| 400 | 15.95 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 16 | 5 |
| 428 | 15.96 | atmosphere | 1000.0 | 43200 | < th | dose independent | sin | 7 | NA |
| 444 | 15.96 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 16 | 19 |
| 465 | 15.97 | atmosphere | 1000.0 | 43200 | > th | dose independent | sin | 7 | NA |
| 498 | 15.97 | temperature | 25.0 | 14400 | < th | dose dependent | rect. | 17 | 1 |
| 511 | 15.97 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 15 |
| 534 | 15.98 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 538 | 15.98 | temperature | 30.0 | 1440 | < th | dose independent | rect. | 6 | 9 |
| 560 | 15.98 | precipitation | 0.1 | 4320 | > th | dose dependent | sin | 22 | NA |
| 562 | 15.98 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 595 | 15.98 | temperature | 25.0 | 90 | > th | dose dependent | rect. | 1 | 23 |
| 657 | 15.99 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 15 | 6 |
| 690 | 15.99 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 23 | 21 |
| 704 | 16.00 | temperature | 25.0 | 1440 | < th | dose independent | rect. | 6 | 3 |
| 711 | 16.00 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 10 | 7 |
| 760 | 16.00 | temperature | 25.0 | 90 | > th | dose dependent | no | NA | NA |
| 763 | 16.00 | atmosphere | 1000.0 | 43200 | < th | dose dependent | rect. | 16 | 4 |
| 807 | 16.01 | atmosphere | 1000.0 | 43200 | < th | dose independent | no | NA | NA |
| 833 | 16.01 | atmosphere | 1000.0 | 14400 | > th | dose independent | rect. | 10 | 11 |
| 862 | 16.01 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 8 | 19 |
| 879 | 16.01 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 2 | 23 |
| 914 | 16.02 | atmosphere | 1000.0 | 43200 | > th | dose independent | no | NA | NA |
| 918 | 16.02 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 16 | 1 |
| 931 | 16.02 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 17 | 9 |
| 932 | 16.02 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 17 | 9 |
| 943 | 16.02 | atmosphere | 1000.0 | 14400 | < th | dose independent | rect. | 10 | 11 |
| 950 | 16.02 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 9 | 16 |
| 959 | 16.02 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 7 | 20 |
| 972 | 16.02 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 4 | 22 |
| 982 | 16.02 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 2 | 23 |