BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0123100 Os09g0123100|AK103665
         (827 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0123100  Tetratricopeptide-like helical domain containi...  1508   0.0  

>Os09g0123100 Tetratricopeptide-like helical domain containing protein
          Length = 827

 Score = 1508 bits (3905), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 756/806 (93%), Positives = 756/806 (93%)

Query: 22  GMLSVTAAMARDAAVLFQSRRYADCAEVLAQLLLKKEGDPKVLHNMAIAESFLDGCPDPK 81
           GMLSVTAAMARDAAVLFQSRRYADCAEVLAQLLLKKEGDPKVLHNMAIAESFLDGCPDPK
Sbjct: 22  GMLSVTAAMARDAAVLFQSRRYADCAEVLAQLLLKKEGDPKVLHNMAIAESFLDGCPDPK 81

Query: 82  KLLEILGNVKRRSEELACASRQQTDSANXXXXXXXXXXXXXXIIPLISAANNATTYGDEF 141
           KLLEILGNVKRRSEELACASRQQTDSAN              IIPLISAANNATTYGDEF
Sbjct: 82  KLLEILGNVKRRSEELACASRQQTDSANGTGNSVSSGSRGSGIIPLISAANNATTYGDEF 141

Query: 142 DTTIITFNTAVILYHLHDYESALSILDPLYRNIEPIDETTALHVCFLLLDITLALQDASN 201
           DTTIITFNTAVILYHLHDYESALSILDPLYRNIEPIDETTALHVCFLLLDITLALQDASN
Sbjct: 142 DTTIITFNTAVILYHLHDYESALSILDPLYRNIEPIDETTALHVCFLLLDITLALQDASN 201

Query: 202 AADIIQYLERSFGVVXXXXXXXXXXXXXXXXXXXXXXXXISTPPDSDSNTCAGGSENLSA 261
           AADIIQYLERSFGVV                        ISTPPDSDSNTCAGGSENLSA
Sbjct: 202 AADIIQYLERSFGVVSATNQNENANTAQQQSAQPKPSAKISTPPDSDSNTCAGGSENLSA 261

Query: 262 GNFSDDTLEFESFYSTLDGGNQNLGRPILNDFSRXXXXXXXXXXXXKVRLQIYKVRLLLL 321
           GNFSDDTLEFESFYSTLDGGNQNLGRPILNDFSR            KVRLQIYKVRLLLL
Sbjct: 262 GNFSDDTLEFESFYSTLDGGNQNLGRPILNDFSRASADLAATAADLKVRLQIYKVRLLLL 321

Query: 322 TRNLKVAKRELKVLMNMARGRDSSTELLLKSQLEYARGNYRKAVKLLSTPNNRSEQAMLA 381
           TRNLKVAKRELKVLMNMARGRDSSTELLLKSQLEYARGNYRKAVKLLSTPNNRSEQAMLA
Sbjct: 322 TRNLKVAKRELKVLMNMARGRDSSTELLLKSQLEYARGNYRKAVKLLSTPNNRSEQAMLA 381

Query: 382 MFYNNLGCILHQQRSIQTSVWCFSKALKYSLSLRSEKPCKLTAISQDKSCLISYNCGIQH 441
           MFYNNLGCILHQQRSIQTSVWCFSKALKYSLSLRSEKPCKLTAISQDKSCLISYNCGIQH
Sbjct: 382 MFYNNLGCILHQQRSIQTSVWCFSKALKYSLSLRSEKPCKLTAISQDKSCLISYNCGIQH 441

Query: 442 LMCGKPLLAARCFREAMPLLCNRSLFWLRFAECSLLALEKGILTSSGATSCNDEIEVDVM 501
           LMCGKPLLAARCFREAMPLLCNRSLFWLRFAECSLLALEKGILTSSGATSCNDEIEVDVM
Sbjct: 442 LMCGKPLLAARCFREAMPLLCNRSLFWLRFAECSLLALEKGILTSSGATSCNDEIEVDVM 501

Query: 502 GSGKWRHLVINPVKPSHSSESGEEVSLDKYGNLISLRFARQCLLNAQILLDPSTKENLVI 561
           GSGKWRHLVINPVKPSHSSESGEEVSLDKYGNLISLRFARQCLLNAQILLDPSTKENLVI
Sbjct: 502 GSGKWRHLVINPVKPSHSSESGEEVSLDKYGNLISLRFARQCLLNAQILLDPSTKENLVI 561

Query: 562 ASGTEESNQTSLQGQKGSGQKNTTNTDSKPPGPALTNANGEQKGISNLNVTLQSSLALYD 621
           ASGTEESNQTSLQGQKGSGQKNTTNTDSKPPGPALTNANGEQKGISNLNVTLQSSLALYD
Sbjct: 562 ASGTEESNQTSLQGQKGSGQKNTTNTDSKPPGPALTNANGEQKGISNLNVTLQSSLALYD 621

Query: 622 DICRKENLKIKQAILGDLAFIELCLQNHLKALSIAKLLQQLPECSRMYVFLSHVYAAEAL 681
           DICRKENLKIKQAILGDLAFIELCLQNHLKALSIAKLLQQLPECSRMYVFLSHVYAAEAL
Sbjct: 622 DICRKENLKIKQAILGDLAFIELCLQNHLKALSIAKLLQQLPECSRMYVFLSHVYAAEAL 681

Query: 682 CALNRPKEAAEQLTVYLRDGDDIELPYSIENCEKALVEKDSDGEDSVAPVVTKLSSGESQ 741
           CALNRPKEAAEQLTVYLRDGDDIELPYSIENCEKALVEKDSDGEDSVAPVVTKLSSGESQ
Sbjct: 682 CALNRPKEAAEQLTVYLRDGDDIELPYSIENCEKALVEKDSDGEDSVAPVVTKLSSGESQ 741

Query: 742 YSESLKPEEAQGVLYIDLGMTAAVQGELEQANYMVSRGVALLPNNPRAVLASVYVDLLQG 801
           YSESLKPEEAQGVLYIDLGMTAAVQGELEQANYMVSRGVALLPNNPRAVLASVYVDLLQG
Sbjct: 742 YSESLKPEEAQGVLYIDLGMTAAVQGELEQANYMVSRGVALLPNNPRAVLASVYVDLLQG 801

Query: 802 KAQEAIAKLRRCRTVRFRRHSVAVSS 827
           KAQEAIAKLRRCRTVRFRRHSVAVSS
Sbjct: 802 KAQEAIAKLRRCRTVRFRRHSVAVSS 827



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.132    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 23,835,796
Number of extensions: 910122
Number of successful extensions: 2385
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 2384
Number of HSP's successfully gapped: 1
Length of query: 827
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 718
Effective length of database: 11,344,475
Effective search space: 8145333050
Effective search space used: 8145333050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 160 (66.2 bits)