Os09g0103600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : PRP38 family protein.
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Os09g0103600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : PRP38 family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.58 | 0.179 | 11.6 | 0.584 | 0.297 | 0.386 | 0.31 | -0.166 | 0.283 | 19.1 | 50.63 | 1154 | -- | -- |
| 14.62 | 0.178 | 11.6 | 0.57 | 0.295 | 0.38 | 0.327 | -- | 0.281 | 19.1 | 49 | 1152 | -- | -- |
| 14.8 | 0.179 | 11.6 | 0.584 | 0.294 | 0.376 | -- | -0.209 | 0.284 | 18.8 | 47.84 | 1171 | -- | -- |
| 14.86 | 0.18 | 11.6 | 0.563 | 0.286 | 0.351 | -- | -- | 0.279 | 18.6 | 48 | 1210 | -- | -- |
| 18.81 | 0.202 | 11.6 | 0.582 | -- | 0.37 | -- | -0.139 | 0.278 | -- | 49 | 1302 | -- | -- |
| 17.27 | 0.195 | 11.6 | 0.542 | 0.301 | -- | 0.168 | -- | 0.266 | 17.8 | -- | -- | -- | -- |
| 17.34 | 0.195 | 11.6 | 0.541 | 0.302 | -- | -- | -- | 0.267 | 17.7 | -- | -- | -- | -- |
| 18.83 | 0.202 | 11.6 | 0.556 | -- | 0.364 | -- | -- | 0.279 | -- | 50.93 | 1306 | -- | -- |
| 22.56 | 0.221 | 11.6 | -- | 0.265 | 0.387 | -- | -- | 0.245 | 18 | 81 | 1409 | -- | -- |
| 22.06 | 0.219 | 11.6 | 0.531 | -- | -- | -- | -- | 0.26 | -- | -- | -- | -- | -- |
| 25.05 | 0.234 | 11.6 | -- | 0.293 | -- | -- | -- | 0.207 | 17.8 | -- | -- | -- | -- |
| 26.36 | 0.239 | 11.6 | -- | -- | 0.46 | -- | -- | 0.265 | -- | 80.64 | 1349 | -- | -- |
| 29.51 | 0.254 | 11.6 | -- | -- | -- | -- | -- | 0.201 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.45 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 3 |
| 5 | 14.55 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 14 | 14.65 | humidity | 60.0 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 15 | 14.66 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 18 | 14.68 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 19 | 14.68 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 13 | 2 |
| 22 | 14.69 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 27 | 14.69 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 19 | 3 |
| 39 | 14.74 | atmosphere | 1005.0 | 270 | > th | dose independent | rect. | 23 | 8 |
| 50 | 14.75 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 17 | 9 |
| 57 | 14.76 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 7 |
| 70 | 14.78 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 19 |
| 81 | 14.80 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 11 | 17 |
| 93 | 14.81 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 19 |
| 102 | 14.83 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 132 | 14.84 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 17 |
| 149 | 14.86 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 213 | 14.88 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 2 | 3 |
| 217 | 14.88 | humidity | 90.0 | 720 | < th | dose dependent | rect. | 18 | 13 |
| 269 | 14.91 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 16 |
| 355 | 14.93 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 5 | 13 |
| 356 | 14.93 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 5 | 13 |
| 357 | 14.93 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 2 | 14 |
| 389 | 14.94 | humidity | 80.0 | 1440 | > th | dose independent | sin | 0 | NA |
| 390 | 14.94 | humidity | 80.0 | 1440 | < th | dose independent | sin | 0 | NA |
| 393 | 14.94 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 9 |
| 394 | 14.94 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 6 | 10 |
| 415 | 14.94 | humidity | 90.0 | 720 | < th | dose dependent | sin | 13 | NA |
| 450 | 14.95 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 19 | 5 |
| 451 | 14.95 | atmosphere | 1000.0 | 270 | > th | dose dependent | rect. | 24 | 6 |
| 470 | 14.95 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 23 | 18 |
| 473 | 14.95 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 22 | 19 |
| 479 | 14.95 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 20 | 21 |
| 487 | 14.95 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 491 | 14.96 | radiation | 10.0 | 1440 | > th | dose independent | sin | 22 | NA |
| 494 | 14.96 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 6 | 10 |
| 519 | 14.96 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 13 | 17 |
| 526 | 14.96 | humidity | 60.0 | 720 | > th | dose dependent | sin | 15 | NA |
| 527 | 14.96 | humidity | 50.0 | 1440 | > th | dose dependent | sin | 18 | NA |
| 562 | 14.96 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 13 | 17 |
| 612 | 14.97 | radiation | 20.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 689 | 14.98 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 14 |
| 694 | 14.98 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 16 |
| 706 | 14.98 | humidity | 50.0 | 1440 | > th | dose dependent | no | NA | NA |
| 707 | 14.98 | humidity | 90.0 | 1440 | < th | dose dependent | sin | 19 | NA |
| 709 | 14.98 | humidity | 90.0 | 1440 | < th | dose dependent | no | NA | NA |
| 751 | 14.98 | humidity | 50.0 | 1440 | > th | dose dependent | rect. | 5 | 23 |
| 762 | 14.99 | humidity | 70.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 776 | 14.99 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 17 | 22 |
| 827 | 14.99 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 4 | 23 |
| 847 | 15.00 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 2 | 15 |
| 893 | 15.00 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 2 | 15 |
| 934 | 15.01 | humidity | 90.0 | 720 | < th | dose independent | rect. | 20 | 3 |
| 938 | 15.01 | humidity | 90.0 | 720 | < th | dose independent | rect. | 19 | 5 |