BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0103600 Os09g0103600|AK064099
         (392 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os09g0103600  PRP38 family protein                                427   e-120

>Os09g0103600 PRP38 family protein
          Length = 392

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 207/221 (93%), Positives = 207/221 (93%)

Query: 1   MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGT 60
           MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGT
Sbjct: 1   MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGT 60

Query: 61  YGGNRKPTPFLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYL 120
           YGGNRKPTPFLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYL
Sbjct: 61  YGGNRKPTPFLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYL 120

Query: 121 EPLYNDYRKIRHKLSDGKFTLTHVDEFIDDLLTKDYSCDTALPRIQKRWVLETSGTLEPR 180
           EPLYNDYRKIRHKLSDGKFTLTHVDEFIDDLLTKDYSCDTALPRIQKRWVLETSGTLEPR
Sbjct: 121 EPLYNDYRKIRHKLSDGKFTLTHVDEFIDDLLTKDYSCDTALPRIQKRWVLETSGTLEPR 180

Query: 181 RSALXXXXXXXXXXXXXXQPMDIDEPNGREKHDHYRGRSPT 221
           RSAL              QPMDIDEPNGREKHDHYRGRSPT
Sbjct: 181 RSALEDDFEEEEEDKEDEQPMDIDEPNGREKHDHYRGRSPT 221




 Score = 82.8 bits (203), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 41/55 (74%), Positives = 41/55 (74%)

Query: 338 ASPRGHAEDGGSRDXXXXXXXXXXXXXXGNAPDPNDPEIIEMNKLRASLGLKPLK 392
           ASPRGHAEDGGSRD              GNAPDPNDPEIIEMNKLRASLGLKPLK
Sbjct: 338 ASPRGHAEDGGSRDEPKKRKEKKEKKGEGNAPDPNDPEIIEMNKLRASLGLKPLK 392



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,370,872
Number of extensions: 334848
Number of successful extensions: 522
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 522
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 289
Effective length of database: 11,657,759
Effective search space: 3369092351
Effective search space used: 3369092351
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)