BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os09g0103600 Os09g0103600|AK064099
         (392 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40650.1  | chr2:16963588-16965596 REVERSE LENGTH=356          328   4e-90
AT5G37370.1  | chr5:14812845-14815988 REVERSE LENGTH=394           63   3e-10

>AT2G40650.1 | chr2:16963588-16965596 REVERSE LENGTH=356
          Length = 355

 Score =  328 bits (840), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 151/184 (82%), Positives = 170/184 (92%)

Query: 1   MANRTDPLAKSIHGTNPQNLVEKIVRSKIYQSTYWKEQCFGLTAETLVDKAMELDHTGGT 60
           MANRTDPLAK+I GTNPQNLVEKIVR+KIYQ T+WKEQCFGLTAETLVDKAMELDH GGT
Sbjct: 1   MANRTDPLAKNIRGTNPQNLVEKIVRTKIYQHTFWKEQCFGLTAETLVDKAMELDHLGGT 60

Query: 61  YGGNRKPTPFLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYL 120
           +GG+RKPTPFLCL LKMLQIQP+K+IVVEFIKN+DYKYVR+LGAFYLRLT T  DVY+YL
Sbjct: 61  FGGSRKPTPFLCLILKMLQIQPEKEIVVEFIKNDDYKYVRILGAFYLRLTGTDVDVYRYL 120

Query: 121 EPLYNDYRKIRHKLSDGKFTLTHVDEFIDDLLTKDYSCDTALPRIQKRWVLETSGTLEPR 180
           EPLYNDYRK+R KLSDGKF+LTHVDE I++LLTKDYSCD A+PR++KRW LE +G LEPR
Sbjct: 121 EPLYNDYRKVRQKLSDGKFSLTHVDEVIEELLTKDYSCDIAMPRLKKRWTLEQNGLLEPR 180

Query: 181 RSAL 184
           +S L
Sbjct: 181 KSVL 184



>AT5G37370.1 | chr5:14812845-14815988 REVERSE LENGTH=394
          Length = 393

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/156 (30%), Positives = 77/156 (49%), Gaps = 7/156 (4%)

Query: 13  HGTNPQNLVEKIVRSKIYQSTYWKEQCFGL-TAETLVDKAM-ELDHTGGTYGGN-RKPTP 69
           +G   ++L+EK++   I  S Y+KE  +GL T   ++D+   +++H     GGN R P+ 
Sbjct: 7   NGRAYESLLEKVLSMNILSSDYFKE-LYGLKTYHEVIDEIYNQVNHVEPWMGGNCRGPST 65

Query: 70  FLCLALKMLQIQPDKDIVVEFIKNEDYKYVRVLGAFYLRLTATVADVYQYLEPLYNDYRK 129
             CL  K   ++     +   +K+ D  Y+R +G  YLR  A    ++ + EP   D  +
Sbjct: 66  AYCLLYKFFTMKLTVKQMHGLLKHTDSPYIRAVGFLYLRYVADAKTLWTWYEPYIKDDEE 125

Query: 130 IRHKLSDGKFTLTHVDEFIDDLLTKDYSCDTALPRI 165
                S+G+ T   V  ++ DLL   Y  DT  PRI
Sbjct: 126 FSPG-SNGRMTTMGV--YVRDLLLGLYYFDTLFPRI 158



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.317    0.136    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,892,724
Number of extensions: 215675
Number of successful extensions: 380
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 378
Number of HSP's successfully gapped: 2
Length of query: 392
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 291
Effective length of database: 8,337,553
Effective search space: 2426227923
Effective search space used: 2426227923
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 113 (48.1 bits)