Os08g0562700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Aminopeptidase.
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Os08g0562700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Aminopeptidase.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.36 | 0.232 | 13.6 | -0.194 | 0.967 | 0.307 | 0.0922 | -0.697 | -0.0264 | 19 | 25.5 | 89 | -- | -- |
| 25.19 | 0.234 | 13.6 | -0.277 | 0.983 | 0.363 | 0.165 | -- | -0.0461 | 18.9 | 25.4 | 93 | -- | -- |
| 24.38 | 0.23 | 13.6 | -0.194 | 0.968 | 0.307 | -- | -0.697 | -0.0262 | 19 | 25.5 | 90 | -- | -- |
| 25.19 | 0.234 | 13.6 | -0.292 | 0.974 | 0.379 | -- | -- | -0.0444 | 19 | 25.23 | 95 | -- | -- |
| 72.14 | 0.398 | 13.6 | -0.247 | -- | 0.307 | -- | -0.591 | -0.0637 | -- | 24.2 | 2 | -- | -- |
| 27.09 | 0.244 | 13.6 | -0.387 | 0.949 | -- | 0.105 | -- | -0.123 | 19.2 | -- | -- | -- | -- |
| 27.11 | 0.244 | 13.6 | -0.389 | 0.949 | -- | -- | -- | -0.122 | 19.2 | -- | -- | -- | -- |
| 72.7 | 0.399 | 13.6 | -0.327 | -- | 0.372 | -- | -- | -0.0836 | -- | 23.71 | 2 | -- | -- |
| 27.37 | 0.244 | 13.6 | -- | 1 | 0.467 | -- | -- | -0.0264 | 19 | 24.92 | 215 | -- | -- |
| 74.82 | 0.404 | 13.6 | -0.406 | -- | -- | -- | -- | -0.139 | -- | -- | -- | -- | -- |
| 31.1 | 0.261 | 13.6 | -- | 0.953 | -- | -- | -- | -0.0791 | 19.2 | -- | -- | -- | -- |
| 72.05 | 0.395 | 13.6 | -- | -- | 0.561 | -- | -- | -0.017 | -- | 18.03 | 36053 | -- | -- |
| 79.16 | 0.415 | 13.6 | -- | -- | -- | -- | -- | -0.0938 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.50 | temperature | 20 | 10 | > th | dose dependent | sin | 7 | NA |
| 6 | 21.05 | temperature | 25 | 10 | > th | dose independent | sin | 7 | NA |
| 11 | 21.33 | temperature | 20 | 30 | > th | dose dependent | rect. | 19 | 17 |
| 15 | 21.43 | temperature | 25 | 10 | > th | dose independent | rect. | 20 | 16 |
| 23 | 21.69 | temperature | 20 | 10 | > th | dose dependent | rect. | 22 | 14 |
| 31 | 21.76 | temperature | 20 | 10 | > th | dose dependent | rect. | 24 | 12 |
| 36 | 21.85 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 3 |
| 38 | 21.88 | temperature | 25 | 270 | < th | dose dependent | rect. | 23 | 10 |
| 43 | 21.96 | temperature | 25 | 30 | < th | dose independent | sin | 6 | NA |
| 45 | 22.00 | temperature | 20 | 30 | > th | dose dependent | rect. | 17 | 19 |
| 53 | 22.05 | temperature | 20 | 270 | > th | dose dependent | rect. | 19 | 14 |
| 59 | 22.12 | temperature | 30 | 30 | < th | dose dependent | sin | 6 | NA |
| 62 | 22.13 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 11 |
| 63 | 22.14 | temperature | 25 | 10 | > th | dose independent | rect. | 24 | 12 |
| 71 | 22.20 | temperature | 25 | 10 | > th | dose independent | rect. | 4 | 8 |
| 74 | 22.22 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 19 |
| 86 | 22.27 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 2 |
| 95 | 22.31 | temperature | 20 | 270 | > th | dose dependent | rect. | 24 | 9 |
| 104 | 22.34 | temperature | 25 | 720 | < th | dose independent | rect. | 17 | 15 |
| 118 | 22.42 | temperature | 25 | 720 | < th | dose independent | rect. | 19 | 11 |
| 125 | 22.43 | temperature | 20 | 30 | > th | dose dependent | rect. | 4 | 8 |
| 155 | 22.53 | temperature | 25 | 720 | < th | dose independent | sin | 12 | NA |
| 161 | 22.54 | temperature | 25 | 90 | < th | dose dependent | rect. | 1 | 10 |
| 185 | 22.64 | temperature | 20 | 720 | > th | dose dependent | rect. | 24 | 1 |
| 236 | 22.77 | temperature | 25 | 720 | > th | dose independent | rect. | 19 | 12 |
| 338 | 23.03 | temperature | 25 | 10 | > th | dose independent | rect. | 17 | 21 |
| 344 | 23.03 | temperature | 20 | 30 | > th | dose dependent | rect. | 15 | 21 |
| 345 | 23.04 | temperature | 25 | 720 | > th | dose independent | sin | 12 | NA |
| 393 | 23.15 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 12 |
| 426 | 23.21 | wind | 7 | 14400 | > th | dose dependent | rect. | 23 | 15 |
| 427 | 23.21 | wind | 7 | 14400 | > th | dose dependent | rect. | 22 | 17 |
| 434 | 23.22 | wind | 7 | 14400 | > th | dose dependent | rect. | 3 | 11 |
| 450 | 23.24 | temperature | 10 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 453 | 23.25 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 8 |
| 455 | 23.25 | temperature | 25 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 469 | 23.28 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 16 |
| 472 | 23.28 | temperature | 25 | 720 | < th | dose dependent | rect. | 20 | 6 |
| 481 | 23.29 | humidity | 50 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 486 | 23.29 | wind | 9 | 14400 | > th | dose dependent | rect. | 19 | 20 |
| 489 | 23.30 | temperature | 25 | 90 | < th | dose independent | rect. | 23 | 10 |
| 493 | 23.30 | wind | 7 | 14400 | > th | dose dependent | sin | 4 | NA |
| 501 | 23.31 | wind | 7 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 511 | 23.32 | wind | 7 | 14400 | < th | dose independent | rect. | 10 | 3 |
| 513 | 23.32 | temperature | 25 | 270 | > th | dose independent | rect. | 24 | 8 |
| 514 | 23.32 | wind | 7 | 14400 | > th | dose independent | rect. | 5 | 9 |
| 524 | 23.33 | wind | 9 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 525 | 23.33 | wind | 9 | 14400 | < th | dose independent | rect. | 18 | 21 |
| 533 | 23.34 | wind | 7 | 14400 | > th | dose independent | rect. | 10 | 3 |
| 539 | 23.35 | wind | 7 | 14400 | < th | dose independent | rect. | 9 | 5 |
| 540 | 23.35 | wind | 7 | 14400 | < th | dose independent | rect. | 7 | 7 |
| 543 | 23.35 | wind | 9 | 14400 | > th | dose independent | rect. | 19 | 19 |
| 551 | 23.36 | wind | 7 | 14400 | > th | dose independent | rect. | 7 | 7 |
| 560 | 23.36 | humidity | 50 | 43200 | < th | dose dependent | rect. | 4 | 7 |
| 566 | 23.37 | wind | 7 | 14400 | > th | dose independent | rect. | 9 | 5 |
| 573 | 23.37 | humidity | 50 | 43200 | < th | dose dependent | rect. | 6 | 5 |
| 596 | 23.38 | wind | 5 | 14400 | > th | dose dependent | rect. | 11 | 2 |
| 599 | 23.38 | humidity | 50 | 43200 | < th | dose dependent | rect. | 8 | 3 |
| 600 | 23.38 | wind | 7 | 14400 | > th | dose dependent | rect. | 9 | 5 |
| 607 | 23.39 | wind | 9 | 14400 | > th | dose independent | sin | 7 | NA |
| 625 | 23.40 | wind | 9 | 14400 | < th | dose independent | sin | 6 | NA |
| 632 | 23.40 | wind | 7 | 14400 | < th | dose independent | rect. | 1 | 14 |
| 677 | 23.42 | temperature | 20 | 30 | > th | dose dependent | rect. | 6 | 6 |
| 728 | 23.45 | wind | 9 | 14400 | < th | dose dependent | rect. | 11 | 1 |
| 759 | 23.46 | humidity | 50 | 43200 | < th | dose dependent | rect. | 17 | 18 |
| 788 | 23.49 | wind | 7 | 14400 | > th | dose independent | sin | 4 | NA |
| 821 | 23.51 | wind | 7 | 14400 | < th | dose independent | sin | 4 | NA |
| 838 | 23.51 | temperature | 10 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 851 | 23.52 | temperature | 25 | 10 | < th | dose independent | rect. | 22 | 14 |
| 861 | 23.52 | wind | 7 | 14400 | > th | dose dependent | rect. | 22 | 22 |
| 893 | 23.54 | temperature | 25 | 270 | > th | dose independent | rect. | 22 | 11 |
| 949 | 23.56 | wind | 7 | 14400 | > th | dose dependent | rect. | 2 | 18 |
| 958 | 23.57 | wind | 9 | 14400 | < th | dose independent | rect. | 22 | 22 |
| 959 | 23.57 | wind | 9 | 14400 | > th | dose independent | rect. | 13 | 23 |