BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0562700 Os08g0562700|AK064900
(418 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G63770.5 | chr1:23657791-23664243 REVERSE LENGTH=1014 667 0.0
AT4G33090.1 | chr4:15965915-15970418 REVERSE LENGTH=880 80 1e-15
AT5G13520.1 | chr5:4342117-4344571 REVERSE LENGTH=617 63 2e-10
>AT1G63770.5 | chr1:23657791-23664243 REVERSE LENGTH=1014
Length = 1013
Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 311/385 (80%), Positives = 344/385 (89%), Gaps = 1/385 (0%)
Query: 1 MDLPKEIFLKEYKKPDYLFDSVNLEFQLGEDKTIVTSKIAVSPGTEGTSSPLTLHGRDLK 60
MD PKEIFLK Y KPDY F++V+L F LGE+KTIV+SKI VSP +G+S+ L L G DLK
Sbjct: 93 MDAPKEIFLKNYTKPDYYFETVDLSFSLGEEKTIVSSKIKVSPRVKGSSAALVLDGHDLK 152
Query: 61 LLSIKVNGKDLKSEDYMVDSRHLTV-SRPPGGTFNLEIVTEIYPQLNTSLEGLYKSTGNF 119
LLS+KV GK LK DY +DSRHLT+ S P +F LEI TEIYP NTSLEGLYKS+GNF
Sbjct: 153 LLSVKVEGKLLKEGDYQLDSRHLTLPSLPAEESFVLEIDTEIYPHKNTSLEGLYKSSGNF 212
Query: 120 CTQCEAEGFRKITYFQDRPDVMATYTCRIEADKTLYPVLLSNGNLIEQGDLEGGKHYALW 179
CTQCEAEGFRKIT++QDRPD+MA YTCR+E DKTLYPVLLSNGNLI QGD+EGG+HYALW
Sbjct: 213 CTQCEAEGFRKITFYQDRPDIMAKYTCRVEGDKTLYPVLLSNGNLISQGDIEGGRHYALW 272
Query: 180 EDPFKKPSYLFALVAGQLDCREDSFTTCSGRKVTLRIWTPGQDLAKTAHAMYSLKAAMKW 239
EDPFKKP YLFALVAGQL R+D+FTT SGR+V+L+IWTP +DL KTAHAMYSLKAAMKW
Sbjct: 273 EDPFKKPCYLFALVAGQLVSRDDTFTTRSGRQVSLKIWTPAEDLPKTAHAMYSLKAAMKW 332
Query: 240 DEEVFGLEYDLDLFNIVVVPDFNMGAMENKSLNIFQSRLVLASPETATDGDYAAILGVVG 299
DE+VFGLEYDLDLFNIV VPDFNMGAMENKSLNIF S+LVLASPETATD DYAAILGV+G
Sbjct: 333 DEDVFGLEYDLDLFNIVAVPDFNMGAMENKSLNIFNSKLVLASPETATDADYAAILGVIG 392
Query: 300 HEYFHNWTGNRVTCRDWFQLTLKEGLTVFRDQEFSSDLGCRTVKRIADVSKLRTYQFPQD 359
HEYFHNWTGNRVTCRDWFQL+LKEGLTVFRDQEFSSD+G RTVKRIADVSKLR YQFPQD
Sbjct: 393 HEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDMGSRTVKRIADVSKLRIYQFPQD 452
Query: 360 AGPMAHPIRPHSYIKMDNFYTGEFM 384
AGPMAHP+RPHSYIKMDNFYTG+F+
Sbjct: 453 AGPMAHPVRPHSYIKMDNFYTGKFL 477
>AT4G33090.1 | chr4:15965915-15970418 REVERSE LENGTH=880
Length = 879
Score = 80.5 bits (197), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 98/232 (42%), Gaps = 15/232 (6%)
Query: 105 LNTSLEGLYKST--------GNFCTQCEAEGFRKITYFQDRPDVMATYTCRIEADKTLYP 156
LN ++G Y+ST TQ E R+ D P AT+ +E L
Sbjct: 111 LNDKMKGFYRSTYEHNGEKKNMAVTQFEPADARRCFPCWDEPACKATFKITLEVPTDL-- 168
Query: 157 VLLSNGNLIEQGDLEGGKHYALWEDPFKKPSYLFALVAGQLDCREDSFTTCSGRKVTLRI 216
V LSN ++E+ K + E P +YL A+V G D ED T G KV +
Sbjct: 169 VALSNMPIMEEKVNGNLKIVSYQESPIMS-TYLVAIVVGLFDYVEDH--TSDGIKVRVYC 225
Query: 217 WTPGQDLAKTAHAMYSLKAAMKWDEEVFGLEYDLDLFNIVVVPDFNMGAMENKSLNIFQS 276
D K A++ + +E F + Y L +++ +PDF GAMEN L ++
Sbjct: 226 QVGKADQGK--FALHVGAKTLDLFKEYFAVPYPLPKMDMIAIPDFAAGAMENYGLVTYRE 283
Query: 277 RLVLASPETATDGDYAAILGVVGHEYFHNWTGNRVTCRDWFQLTLKEGLTVF 328
+L + + + + VV HE H W GN VT W L L EG +
Sbjct: 284 TALLYDEQHSAASNKQRVATVVAHELAHQWFGNLVTMEWWTHLWLNEGFATW 335
>AT5G13520.1 | chr5:4342117-4344571 REVERSE LENGTH=617
Length = 616
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 96/234 (41%), Gaps = 43/234 (18%)
Query: 121 TQCEAEGFRKITYFQDRPDVMATYTCRIEADKTLYPVLLSNGNLIEQGDLEGGKHY---- 176
TQC+A R I QD P Y + +L V+ + E KH
Sbjct: 127 TQCQAIHARSIFPCQDTPAARIRYDVVMNIPNSLSAVMSARHVRRRLAVPEEAKHLEAGS 186
Query: 177 ---ALW------------EDPFKKPSYLFALVAGQLDCREDSFTTCSGRKVTLRIWTPG- 220
+LW E P P YLFA G+L RE T R++T
Sbjct: 187 LGSSLWCGEDRVVEEFAMEQPI--PPYLFAFAVGELGFREVGPRT--------RVYTESA 236
Query: 221 --QDLAKTAHAMYSLKAAMKWDEEVFGLEYDLDLFNIVVVP-DFNMGAMENKSLNIFQSR 277
+ L A + +K E++FG +Y+ + F+++V+P F G MEN R
Sbjct: 237 AIEVLDAAALEFAGTEDMIKQGEKLFG-DYEWERFDLLVLPPSFPYGGMENP-------R 288
Query: 278 LVLASPETATDGDYAAILGVVGHEYFHNWTGNRVTCRDWFQLTLKEGLTVFRDQ 331
+V +P T GD A VV HE H+WTGN +T + L EG T + ++
Sbjct: 289 MVFLTP-TVIKGD-ATGAQVVAHELAHSWTGNLITNINNEHFWLNEGFTTYAER 340
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.137 0.419
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,669,257
Number of extensions: 410040
Number of successful extensions: 782
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 780
Number of HSP's successfully gapped: 3
Length of query: 418
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 317
Effective length of database: 8,337,553
Effective search space: 2643004301
Effective search space used: 2643004301
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)