Os08g0556700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myotubularin-related domain containing protein.
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Os08g0556700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myotubularin-related domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 44.06 | 0.312 | 8.85 | -0.616 | 0.488 | -0.248 | 0.17 | 0.533 | -0.271 | 7.34 | 20.4 | 120 | -- | -- |
| 44.75 | 0.312 | 8.87 | -0.64 | 0.473 | -0.385 | 0.13 | -- | -0.296 | 7.4 | 19.4 | 191 | -- | -- |
| 44.14 | 0.309 | 8.85 | -0.614 | 0.488 | -0.248 | -- | 0.528 | -0.272 | 7.29 | 20.41 | 120 | -- | -- |
| 44.76 | 0.312 | 8.86 | -0.634 | 0.476 | -0.404 | -- | -- | -0.289 | 7.33 | 19.36 | 191 | -- | -- |
| 56.76 | 0.351 | 8.86 | -0.617 | -- | -0.251 | -- | 0.446 | -0.264 | -- | 20.4 | 139 | -- | -- |
| 48.59 | 0.327 | 8.87 | -0.783 | 0.494 | -- | 0.0939 | -- | -0.345 | 6.91 | -- | -- | -- | -- |
| 48.61 | 0.327 | 8.87 | -0.782 | 0.494 | -- | -- | -- | -0.346 | 6.86 | -- | -- | -- | -- |
| 52.19 | 0.336 | 8.85 | -0.682 | -- | -0.396 | -- | -- | -0.183 | -- | 25.1 | 498 | -- | -- |
| 54.99 | 0.345 | 8.84 | -- | 0.501 | -0.579 | -- | -- | -0.215 | 7.01 | 19.16 | 206 | -- | -- |
| 61.41 | 0.366 | 8.88 | -0.771 | -- | -- | -- | -- | -0.336 | -- | -- | -- | -- | -- |
| 64.72 | 0.376 | 8.85 | -- | 0.485 | -- | -- | -- | -0.258 | 6.96 | -- | -- | -- | -- |
| 63.18 | 0.37 | 8.82 | -- | -- | -0.468 | -- | -- | -0.0786 | -- | 25.2 | 491 | -- | -- |
| 77.1 | 0.41 | 8.86 | -- | -- | -- | -- | -- | -0.251 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 40.92 | temperature | 25 | 270 | < th | dose dependent | rect. | 15 | 15 |
| 10 | 41.18 | temperature | 15 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 30 | 41.49 | temperature | 20 | 30 | > th | dose dependent | rect. | 22 | 6 |
| 49 | 41.69 | temperature | 25 | 270 | < th | dose dependent | sin | 14 | NA |
| 69 | 41.82 | temperature | 25 | 720 | < th | dose dependent | rect. | 19 | 1 |
| 73 | 41.83 | temperature | 25 | 720 | < th | dose dependent | rect. | 17 | 4 |
| 82 | 41.87 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 6 |
| 106 | 41.96 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 6 |
| 137 | 42.08 | temperature | 20 | 10 | > th | dose independent | rect. | 22 | 16 |
| 170 | 42.23 | temperature | 20 | 270 | > th | dose independent | rect. | 17 | 10 |
| 183 | 42.29 | temperature | 20 | 30 | > th | dose independent | rect. | 11 | 17 |
| 212 | 42.36 | temperature | 20 | 30 | > th | dose independent | rect. | 9 | 19 |
| 263 | 42.48 | temperature | 20 | 270 | < th | dose independent | rect. | 16 | 13 |
| 445 | 42.87 | temperature | 20 | 90 | < th | dose independent | sin | 11 | NA |
| 576 | 43.04 | temperature | 20 | 10 | < th | dose independent | rect. | 17 | 13 |
| 598 | 43.07 | wind | 9 | 720 | < th | dose independent | rect. | 23 | 16 |
| 599 | 43.07 | temperature | 20 | 270 | > th | dose dependent | rect. | 22 | 1 |
| 639 | 43.12 | wind | 1 | 720 | > th | dose independent | rect. | 15 | 8 |
| 670 | 43.17 | temperature | 25 | 720 | < th | dose independent | rect. | 12 | 12 |
| 707 | 43.21 | temperature | 20 | 90 | > th | dose independent | rect. | 17 | 21 |
| 737 | 43.24 | temperature | 20 | 10 | < th | dose independent | sin | 11 | NA |
| 815 | 43.34 | temperature | 25 | 720 | < th | dose independent | rect. | 13 | 9 |
| 826 | 43.35 | temperature | 20 | 10 | > th | dose independent | rect. | 20 | 18 |
| 848 | 43.38 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 7 |
| 882 | 43.41 | temperature | 25 | 720 | < th | dose independent | rect. | 15 | 5 |