BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0556700 Os08g0556700|AK099902
(539 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G10550.1 | chr3:3293210-3298452 REVERSE LENGTH=841 553 e-158
AT5G04540.1 | chr5:1296826-1302299 REVERSE LENGTH=834 532 e-151
>AT3G10550.1 | chr3:3293210-3298452 REVERSE LENGTH=841
Length = 840
Score = 553 bits (1425), Expect = e-158, Method: Compositional matrix adjust.
Identities = 283/500 (56%), Positives = 351/500 (70%), Gaps = 29/500 (5%)
Query: 1 MDGSGSWDAIDWNQIKEPRPPRSSSRGMEDF-----LLEDEEVYAQGHGVVLLNTDEAGI 55
MDG+GSWD ++W ++ S+ G F LLE E V +G+GVVL+NTDEAG
Sbjct: 24 MDGTGSWDTLEWTKLD-------STSGSGSFSNLSCLLESERVIVEGYGVVLINTDEAGT 76
Query: 56 LSVTNFRLLFVSQATKGVIELGTIPLTAIEKINDDV-KLQPLPRQHDKKQPRELLQVIGK 114
L VTNFR+LF+S+ T+ VI LGTIPL IEK N V K+Q PRQ DK PR LLQV GK
Sbjct: 77 LLVTNFRILFLSEGTRKVIPLGTIPLATIEKFNKMVLKVQSSPRQSDKIPPRRLLQVTGK 136
Query: 115 DMRVIVFDFLPKTKQKNEVFDALRRYSKPTHLWDLYAFSCDPSTVYQKSDPKMRLLKEYH 174
DMR+IV+ F P+TKQ+ VFDAL + +KP +WDLY F+C PS + ++PK RLL EY
Sbjct: 137 DMRIIVYGFRPRTKQRRNVFDALLKCTKPERVWDLYTFACGPSK-FGNANPKERLLNEYF 195
Query: 175 RLFRKWFPHSGSEFEKD----LRNEWWRVSKVNSTYSLCSTYPSALIVPRSISDEDLLQA 230
RL K + + +D L NE WR+S +NS Y+LC TYP A ++P+SISD +LLQA
Sbjct: 196 RLLGKSSIRASMDMIEDGAFTLSNELWRISDLNSNYNLCQTYPFAFMIPKSISDAELLQA 255
Query: 231 SSFRSGRRLPVISWCDPGSGAVLARSSQPLVGLMMNFRNNTDEKLVSALCTQIIDATGSL 290
SFR+ RLPVI+WC PGSGAV+ARSSQPLVGLMMN R+N DEKLV+A C+Q+ A G
Sbjct: 256 CSFRARCRLPVITWCQPGSGAVIARSSQPLVGLMMNMRSNLDEKLVAAFCSQLPGAKGER 315
Query: 291 RKLYIVDARPRXXXXXXXXXXXXSESASNYPRSEVLFLGIQNIHTMRDSLFRLRDYVDTH 350
RKLYI DARPR SES+SNY +SE++F GI NIH MR+S R+RDY+D H
Sbjct: 316 RKLYIADARPRKNALANGAMGGGSESSSNYFQSEIVFFGIDNIHAMRESFSRVRDYLDMH 375
Query: 351 GXXXXXXXXXXXXXXGDRRNRGSTWGGGNLNSMTQFSSMLGE--WLNHIQSIMVGASWIA 408
G R+ G TWGGGNL+SM+ S+LG+ WL HIQS++ GA+WIA
Sbjct: 376 GTTSSDGRSSFL------RHGGWTWGGGNLSSMSASVSLLGDSGWLIHIQSVLAGAAWIA 429
Query: 409 AQIVQESASVLVHCSDGWDRTTQLVALACLLLDPYYRTFNGFQALVEKDWLAFGHPFAER 468
A++ ESASVLVHCSDGWDRTTQLV+LACLLLDPYYRTF GFQALVEKDWLAFGHPF++R
Sbjct: 430 ARVAMESASVLVHCSDGWDRTTQLVSLACLLLDPYYRTFAGFQALVEKDWLAFGHPFSDR 489
Query: 469 MGVPTITDNNSGSQFELLRQ 488
+G+P I+ + + F+ RQ
Sbjct: 490 VGMPNISGSGN---FDFPRQ 506
>AT5G04540.1 | chr5:1296826-1302299 REVERSE LENGTH=834
Length = 833
Score = 532 bits (1371), Expect = e-151, Method: Compositional matrix adjust.
Identities = 267/492 (54%), Positives = 347/492 (70%), Gaps = 19/492 (3%)
Query: 1 MDGSGSWDAIDWNQIKEPRPPRSSSRGMEDFLLEDEEVYAQGHGVVLLNTDEAGILSVTN 60
M+G+GSWD ++W ++ S S D LLE E + + GV+L+NTDEAG L ++N
Sbjct: 21 MEGTGSWDVLEWTKLDSA--SWSGSYSNLDCLLESERIIFEACGVILINTDEAGTLLLSN 78
Query: 61 FRLLFVSQATKGVIELGTIPLTAIEKINDDV-KLQPLPRQHDKKQPRELLQVIGKDMRVI 119
FR+LF+S+ T+ ++ LGTIP AIEK N K+Q +++ P LLQV GKDMR++
Sbjct: 79 FRILFLSEGTRKLVPLGTIPFVAIEKFNKLAPKVQSNKYHNNENAPTRLLQVTGKDMRIV 138
Query: 120 VFDFLPKTKQKNEVFDALRRYSKPTHLWDLYAFSCDPSTVYQKSDPKMRLLKEYHRLFRK 179
V+ F P TKQ++ V D L R +KP +WDLYAF+C PS + ++PK RLL EY RL K
Sbjct: 139 VYGFRPGTKQRHTVVDTLLRCNKPERVWDLYAFTCGPSQ-FGNTNPKERLLNEYFRLLGK 197
Query: 180 WFPHSGSEFEKD----LRNEWWRVSKVNSTYSLCSTYPSALIVPRSISDEDLLQASSFRS 235
+ +D L N+ WR++ +NS Y LC +YP AL+VP+SISDE+LLQ S+FR+
Sbjct: 198 SSQRASMNMIEDGSFTLSNDLWRITNLNSNYDLCQSYPFALMVPKSISDEELLQTSTFRA 257
Query: 236 GRRLPVISWCDPGSGAVLARSSQPLVGLMMNFRNNTDEKLVSALCTQIIDATGSLRKLYI 295
RLPVISWC PGSGAV+ARSSQPLVGLMMN R+N+DEKLV++ CTQ+ G+ RKLYI
Sbjct: 258 RCRLPVISWCHPGSGAVIARSSQPLVGLMMNMRSNSDEKLVASFCTQLAGHKGARRKLYI 317
Query: 296 VDARPRXXXXXXXXXXXXSESASNYPRSEVLFLGIQNIHTMRDSLFRLRDYVDTHGXXXX 355
VDARPR SES+SNY +SE++FLGI NIH MR+S RLRDY+D HG
Sbjct: 318 VDARPRKNALANGAKGGGSESSSNYLQSEIVFLGIDNIHAMRESFSRLRDYLDMHGTTSS 377
Query: 356 XXXXXXXXXXGDRRNRGSTWGGGNLNSMTQFSSMLGE--WLNHIQSIMVGASWIAAQIVQ 413
R+ G TWGGGNL+SM+ S+LG+ WL+HIQSI+ G +WIAA++
Sbjct: 378 DGTSSFL------RHGGWTWGGGNLSSMSASVSVLGDSGWLSHIQSILAGVAWIAARVAM 431
Query: 414 ESASVLVHCSDGWDRTTQLVALACLLLDPYYRTFNGFQALVEKDWLAFGHPFAERMGVPT 473
ESASVLVHCSDGWDRTTQLV+LACLLLDPYYRTF+GFQALVEKDWL+FGHPF++R+G+P
Sbjct: 432 ESASVLVHCSDGWDRTTQLVSLACLLLDPYYRTFSGFQALVEKDWLSFGHPFSDRVGMPN 491
Query: 474 ITDNNSGSQFEL 485
++++ + FEL
Sbjct: 492 VSESGN---FEL 500
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 11,235,611
Number of extensions: 457457
Number of successful extensions: 989
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 977
Number of HSP's successfully gapped: 2
Length of query: 539
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 436
Effective length of database: 8,282,721
Effective search space: 3611266356
Effective search space used: 3611266356
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)