BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0556700 Os08g0556700|AK099902
(539 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0556700 Myotubularin-related domain containing protein 1007 0.0
>Os08g0556700 Myotubularin-related domain containing protein
Length = 539
Score = 1007 bits (2604), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/539 (91%), Positives = 492/539 (91%)
Query: 1 MDGSGSWDAIDWNQIKEPRPPRSSSRGMEDFLLEDEEVYAQGHGVVLLNTDEAGILSVTN 60
MDGSGSWDAIDWNQIKEPRPPRSSSRGMEDFLLEDEEVYAQGHGVVLLNTDEAGILSVTN
Sbjct: 1 MDGSGSWDAIDWNQIKEPRPPRSSSRGMEDFLLEDEEVYAQGHGVVLLNTDEAGILSVTN 60
Query: 61 FRLLFVSQATKGVIELGTIPLTAIEKINDDVKLQPLPRQHDKKQPRELLQVIGKDMRVIV 120
FRLLFVSQATKGVIELGTIPLTAIEKINDDVKLQPLPRQHDKKQPRELLQVIGKDMRVIV
Sbjct: 61 FRLLFVSQATKGVIELGTIPLTAIEKINDDVKLQPLPRQHDKKQPRELLQVIGKDMRVIV 120
Query: 121 FDFLPKTKQKNEVFDALRRYSKPTHLWDLYAFSCDPSTVYQKSDPKMRLLKEYHRLFRKW 180
FDFLPKTKQKNEVFDALRRYSKPTHLWDLYAFSCDPSTVYQKSDPKMRLLKEYHRLFRKW
Sbjct: 121 FDFLPKTKQKNEVFDALRRYSKPTHLWDLYAFSCDPSTVYQKSDPKMRLLKEYHRLFRKW 180
Query: 181 FPHSGSEFEKDLRNEWWRVSKVNSTYSLCSTYPSALIVPRSISDEDLLQASSFRSGRRLP 240
FPHSGSEFEKDLRNEWWRVSKVNSTYSLCSTYPSALIVPRSISDEDLLQASSFRSGRRLP
Sbjct: 181 FPHSGSEFEKDLRNEWWRVSKVNSTYSLCSTYPSALIVPRSISDEDLLQASSFRSGRRLP 240
Query: 241 VISWCDPGSGAVLARSSQPLVGLMMNFRNNTDEKLVSALCTQIIDATGSLRKLYIVDARP 300
VISWCDPGSGAVLARSSQPLVGLMMNFRNNTDEKLVSALCTQIIDATGSLRKLYIVDARP
Sbjct: 241 VISWCDPGSGAVLARSSQPLVGLMMNFRNNTDEKLVSALCTQIIDATGSLRKLYIVDARP 300
Query: 301 RXXXXXXXXXXXXSESASNYPRSEVLFLGIQNIHTMRDSLFRLRDYVDTHGXXXXXXXXX 360
R SESASNYPRSEVLFLGIQNIHTMRDSLFRLRDYVDTHG
Sbjct: 301 RANALANGAKGGGSESASNYPRSEVLFLGIQNIHTMRDSLFRLRDYVDTHGSVSSNGTSS 360
Query: 361 XXXXXGDRRNRGSTWGGGNLNSMTQFSSMLGEWLNHIQSIMVGASWIAAQIVQESASVLV 420
GDRRNRGSTWGGGNLNSMTQFSSMLGEWLNHIQSIMVGASWIAAQIVQESASVLV
Sbjct: 361 AVSLVGDRRNRGSTWGGGNLNSMTQFSSMLGEWLNHIQSIMVGASWIAAQIVQESASVLV 420
Query: 421 HCSDGWDRTTQLVALACLLLDPYYRTFNGFQALVEKDWLAFGHPFAERMGVPTITDNNSG 480
HCSDGWDRTTQLVALACLLLDPYYRTFNGFQALVEKDWLAFGHPFAERMGVPTITDNNSG
Sbjct: 421 HCSDGWDRTTQLVALACLLLDPYYRTFNGFQALVEKDWLAFGHPFAERMGVPTITDNNSG 480
Query: 481 SQFELLRQPSLGTLSNSPNRGALXXXXXXXXXXXXXXXXXXXXXPILLQVIYSFLGALC 539
SQFELLRQPSLGTLSNSPNRGAL PILLQVIYSFLGALC
Sbjct: 481 SQFELLRQPSLGTLSNSPNRGALGSSVSTSNTTSGQSQTSNNSSPILLQVIYSFLGALC 539
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,580,673
Number of extensions: 707104
Number of successful extensions: 1410
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1409
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 433
Effective length of database: 11,501,117
Effective search space: 4979983661
Effective search space used: 4979983661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)