Os08g0553800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : NmrA-like family protein.
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Os08g0553800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : NmrA-like family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 43.61 | 0.31 | 12.9 | -1.27 | 0.571 | -0.784 | -0.522 | 0.0665 | -0.718 | 0.251 | 16.98 | 97 | -- | -- |
| 43.56 | 0.307 | 12.9 | -1.27 | 0.584 | -0.795 | -0.446 | -- | -0.717 | 0.375 | 16.13 | 107 | -- | -- |
| 43.89 | 0.309 | 12.8 | -1.23 | 0.674 | -0.876 | -- | -0.207 | -0.72 | 0.596 | 15.67 | 116 | -- | -- |
| 44.36 | 0.31 | 12.8 | -1.25 | 0.631 | -0.832 | -- | -- | -0.714 | 0.606 | 15.95 | 116 | -- | -- |
| 47.83 | 0.322 | 12.8 | -1.24 | -- | -0.359 | -- | -0.438 | -0.687 | -- | 21.99 | 108 | -- | -- |
| 53.98 | 0.344 | 12.8 | -1.23 | 0.239 | -- | 0.51 | -- | -0.666 | 12.9 | -- | -- | -- | -- |
| 54.96 | 0.347 | 12.8 | -1.22 | 0.245 | -- | -- | -- | -0.663 | 13.6 | -- | -- | -- | -- |
| 48.68 | 0.325 | 12.8 | -1.23 | -- | -0.368 | -- | -- | -0.688 | -- | 22.85 | 105 | -- | -- |
| 84.96 | 0.429 | 12.8 | -- | 0.63 | -0.784 | -- | -- | -0.58 | 0.0693 | 10.49 | 90 | -- | -- |
| 58.61 | 0.358 | 12.8 | -1.22 | -- | -- | -- | -- | -0.668 | -- | -- | -- | -- | -- |
| 93.87 | 0.453 | 12.8 | -- | 0.267 | -- | -- | -- | -0.527 | 13.8 | -- | -- | -- | -- |
| 86.49 | 0.433 | 12.8 | -- | -- | -0.694 | -- | -- | -0.623 | -- | 10.03 | 1627 | -- | -- |
| 98.19 | 0.463 | 12.8 | -- | -- | -- | -- | -- | -0.532 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.72 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 9 | 23 |
| 2 | 43.83 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 3 | 43.86 | radiation | 20.0 | 90 | < th | dose dependent | no | NA | NA |
| 4 | 43.88 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 6 | 44.24 | radiation | 20.0 | 90 | < th | dose dependent | sin | 2 | NA |
| 7 | 44.27 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 9 | 5 |
| 9 | 44.28 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 15 | 23 |
| 12 | 44.45 | radiation | 10.0 | 90 | > th | dose independent | no | NA | NA |
| 13 | 44.45 | radiation | 10.0 | 90 | > th | dose independent | rect. | 6 | 12 |
| 91 | 44.47 | humidity | 80.0 | 10 | > th | dose dependent | sin | 23 | NA |
| 97 | 44.52 | humidity | 80.0 | 10 | > th | dose independent | sin | 0 | NA |
| 98 | 44.53 | radiation | 10.0 | 90 | > th | dose independent | sin | 2 | NA |
| 101 | 44.55 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 9 | 23 |
| 103 | 44.57 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 17 | 23 |
| 104 | 44.58 | radiation | 10.0 | 90 | > th | dose independent | rect. | 16 | 23 |
| 105 | 44.59 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 1 | 23 |
| 108 | 44.61 | humidity | 80.0 | 1440 | > th | dose independent | rect. | 9 | 5 |
| 113 | 44.64 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 134 | 44.71 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 22 |
| 135 | 44.71 | humidity | 70.0 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 154 | 44.77 | humidity | 80.0 | 10 | > th | dose independent | rect. | 1 | 20 |
| 169 | 44.85 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 13 | 23 |
| 170 | 44.86 | humidity | 60.0 | 30 | > th | dose dependent | rect. | 13 | 19 |
| 173 | 44.87 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 11 | 23 |
| 174 | 44.88 | humidity | 70.0 | 30 | > th | dose dependent | no | NA | NA |
| 181 | 44.89 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 17 | 23 |
| 182 | 44.90 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 4 |
| 184 | 44.90 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 15 | 23 |
| 190 | 44.94 | radiation | 20.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 193 | 44.96 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 4 |
| 194 | 44.96 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 20 |
| 202 | 44.99 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 19 | 23 |
| 216 | 45.08 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 8 | 4 |
| 218 | 45.09 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 219 | 45.10 | wind | 1.0 | 14400 | < th | dose independent | rect. | 4 | 2 |
| 231 | 45.14 | radiation | 10.0 | 90 | < th | dose independent | rect. | 19 | 23 |
| 235 | 45.15 | radiation | 10.0 | 90 | < th | dose independent | rect. | 11 | 23 |
| 236 | 45.15 | humidity | 90.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 247 | 45.20 | radiation | 10.0 | 90 | < th | dose independent | rect. | 9 | 23 |
| 248 | 45.20 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 260 | 45.25 | radiation | 10.0 | 90 | < th | dose independent | sin | 2 | NA |
| 264 | 45.27 | radiation | 10.0 | 90 | < th | dose independent | no | NA | NA |
| 273 | 45.29 | radiation | 10.0 | 270 | < th | dose dependent | rect. | 21 | 23 |
| 314 | 45.41 | wind | 1.0 | 14400 | > th | dose independent | rect. | 4 | 2 |
| 368 | 45.55 | radiation | 10.0 | 90 | < th | dose independent | rect. | 15 | 23 |
| 372 | 45.56 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 23 |
| 378 | 45.58 | wind | 1.0 | 14400 | > th | dose independent | rect. | 2 | 1 |
| 383 | 45.60 | wind | 1.0 | 14400 | < th | dose independent | rect. | 2 | 1 |
| 399 | 45.63 | humidity | 80.0 | 10 | < th | dose independent | sin | 0 | NA |
| 401 | 45.63 | atmosphere | 1000.0 | 10 | > th | dose independent | rect. | 13 | 19 |
| 426 | 45.68 | humidity | 80.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 430 | 45.68 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 1 | 17 |
| 439 | 45.70 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 2 | 19 |
| 457 | 45.73 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 8 | 6 |
| 479 | 45.77 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 14 |
| 507 | 45.82 | humidity | 70.0 | 10 | > th | dose dependent | rect. | 3 | 23 |
| 509 | 45.83 | radiation | 10.0 | 90 | < th | dose independent | rect. | 1 | 16 |
| 517 | 45.84 | radiation | 10.0 | 90 | < th | dose independent | rect. | 24 | 23 |
| 528 | 45.86 | radiation | 10.0 | 90 | < th | dose independent | rect. | 3 | 14 |
| 548 | 45.88 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 9 | 3 |
| 568 | 45.91 | humidity | 70.0 | 30 | > th | dose dependent | rect. | 21 | 23 |
| 576 | 45.93 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 579 | 45.94 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 581 | 45.94 | radiation | 10.0 | 90 | < th | dose independent | rect. | 17 | 23 |
| 589 | 45.95 | radiation | 20.0 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 621 | 45.98 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 9 | 13 |
| 631 | 45.99 | humidity | 80.0 | 10 | > th | dose dependent | rect. | 6 | 15 |
| 648 | 46.02 | humidity | 60.0 | 720 | > th | dose dependent | rect. | 10 | 11 |
| 664 | 46.04 | temperature | 25.0 | 4320 | > th | dose independent | rect. | 1 | 6 |
| 688 | 46.07 | radiation | 10.0 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 714 | 46.10 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 16 | 4 |
| 782 | 46.14 | humidity | 50.0 | 720 | > th | dose dependent | rect. | 9 | 20 |
| 795 | 46.16 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 2 | 4 |
| 809 | 46.18 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 11 | 20 |
| 833 | 46.21 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 7 | 20 |
| 892 | 46.27 | humidity | 80.0 | 10 | < th | dose independent | rect. | 7 | 13 |
| 896 | 46.27 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 23 | 21 |