BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0553800 Os08g0553800|AK066697
(386 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G35250.1 | chr4:16771401-16773269 REVERSE LENGTH=396 627 e-180
AT5G18660.1 | chr5:6220872-6222125 REVERSE LENGTH=418 60 1e-09
AT1G32100.1 | chr1:11546472-11547953 REVERSE LENGTH=318 58 1e-08
AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281 57 1e-08
AT1G16720.1 | chr1:5723161-5726248 FORWARD LENGTH=599 48 7e-06
>AT4G35250.1 | chr4:16771401-16773269 REVERSE LENGTH=396
Length = 395
Score = 627 bits (1617), Expect = e-180, Method: Compositional matrix adjust.
Identities = 296/337 (87%), Positives = 320/337 (94%), Gaps = 3/337 (0%)
Query: 50 VTCNAQTAVPTSIAQGTPVRPTSILVVGATGTLGRQVVRRALDEGYDVRCLVRPRPAPAD 109
VTC+A ++A GTPVRPTSILVVGATGTLGRQ+VRRALDEGYDVRCLVRPRPAPAD
Sbjct: 62 VTCSAAAV---NLAPGTPVRPTSILVVGATGTLGRQIVRRALDEGYDVRCLVRPRPAPAD 118
Query: 110 FLRDWGATVVNADLSKPETIPATLVGIHTVIDCATGRPEEPIRTVDWEGKVALIQCAKAM 169
FLRDWGATVVNADLSKPETIPATLVGIHTVIDCATGRPEEPI+TVDWEGKVALIQCAKAM
Sbjct: 119 FLRDWGATVVNADLSKPETIPATLVGIHTVIDCATGRPEEPIKTVDWEGKVALIQCAKAM 178
Query: 170 GIQKYVFYSIHNCDKHPEVPLMEIKHCTEKFIQDAGLDYLIIRLCGFMQGLIGQYAVPIL 229
GIQKYVFYSIHNCDKHPEVPLMEIK+CTEKF+Q++GL+++ IRLCGFMQGLIGQYAVPIL
Sbjct: 179 GIQKYVFYSIHNCDKHPEVPLMEIKYCTEKFLQESGLNHITIRLCGFMQGLIGQYAVPIL 238
Query: 230 EEKSVWGTDAPTRIAYMDTQDVARLTFIAMRNEKASKKLLTFAGPRAWTTQEVITLCERL 289
EEKSVWGTDAPTR+AYMDTQD+ARLT IA+RNEK + KLLTFAGPRAWTTQEVITLCERL
Sbjct: 239 EEKSVWGTDAPTRVAYMDTQDIARLTLIALRNEKINGKLLTFAGPRAWTTQEVITLCERL 298
Query: 290 AGQDANVTTVPVAVLRFTRQLTRFFQWTNDVADRLAFSEVLSSDTIFSVPMNDTYQLLGV 349
AGQDANVTTVPV+VLR TRQLTRFFQWTNDVADRLAFSEVLSSDT+FS PM +T LLGV
Sbjct: 299 AGQDANVTTVPVSVLRVTRQLTRFFQWTNDVADRLAFSEVLSSDTVFSAPMTETNSLLGV 358
Query: 350 DSKDILTLEKYLQDYFTNILKKLKDLKAQSKQTDIFF 386
D KD++TLEKYLQDYF+NILKKLKDLKAQSKQ+DI+F
Sbjct: 359 DQKDMVTLEKYLQDYFSNILKKLKDLKAQSKQSDIYF 395
>AT5G18660.1 | chr5:6220872-6222125 REVERSE LENGTH=418
Length = 417
Score = 60.5 bits (145), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 120/280 (42%), Gaps = 35/280 (12%)
Query: 54 AQTAVPTSIAQGTPVRPTSILVVGATGTLGRQVVRRALDEGYDVRCLVRPRPA------P 107
++ A S +P + ++LVVG+TG +GR VV+ + G++V + R +
Sbjct: 68 SEIATSPSFRNKSP-KDINVLVVGSTGYIGRFVVKEMIKRGFNVIAVAREKSGIRGKNDK 126
Query: 108 ADFLRDW-GATVVNADLSKPETIPATL----VGIHTVIDCATGRPEEPIR---TVDWEGK 159
+ L+ GA V +D+++ + + ++ G+ V+ C R I+ +D+E
Sbjct: 127 EETLKQLQGANVCFSDVTELDVLEKSIENLGFGVDVVVSCLASR-NGGIKDSWKIDYEAT 185
Query: 160 VALIQCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKHCTEKF---------IQDAGLDYLI 210
+ K G + +V S K PL+E + KF QD+ Y I
Sbjct: 186 KNSLVAGKKFGAKHFVLLSAICVQK----PLLEFQRAKLKFEAELMDLAEQQDSSFTYSI 241
Query: 211 IRLCGFMQGLIGQYAVPILEEKS---VWGTDAPTRIAYMDTQDVARLTFIAMRNEKASKK 267
+R F + L GQ V I+++ ++G + QD+A + E +
Sbjct: 242 VRPTAFFKSLGGQ--VEIVKDGKPYVMFGDGKLCACKPISEQDLAAFIADCVLEENKINQ 299
Query: 268 LLTFAGP-RAWTTQEVITLCERLAGQDANVTTVPVAVLRF 306
+L GP +A T E + ++ G++ VP+ ++ F
Sbjct: 300 VLPIGGPGKALTPLEQGEILFKILGREPKFLKVPIEIMDF 339
>AT1G32100.1 | chr1:11546472-11547953 REVERSE LENGTH=318
Length = 317
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 111/249 (44%), Gaps = 24/249 (9%)
Query: 71 TSILVVGATGTLGRQVVRRALDEGYDVRCLVRPR-----PAPADFL--RDWGATVVNADL 123
T +LVVGATG +G+++VR L EG++ L RP FL + GA +V
Sbjct: 10 TRVLVVGATGYIGKRIVRACLAEGHETYVLQRPEIGLEIEKVQLFLSFKKLGARIVEGSF 69
Query: 124 SKPETIPATLVGIHTVIDCATGRPEEPIRTVDWEGKVALIQCAKAMGIQKYVFYSIHNCD 183
S +++ + + + V+ +G R+ + ++ L++ K G K S D
Sbjct: 70 SDHQSLVSAVKLVDVVVSAMSGV---HFRSHNILVQLKLVEAIKEAGNVKRFLPSEFGMD 126
Query: 184 ----KHPEVPLMEI---KHCTEKFIQDAGLDY-LIIRLC--GFMQGLIGQYA--VPILEE 231
H P E K + I+ AG+ Y ++ C + G + Q +P E+
Sbjct: 127 PPRMGHALPPGRETFDQKMEVRQAIEAAGIPYTYVVGACFAAYFAGNLSQMVTLLPPKEK 186
Query: 232 KSVWGTDAPTRIAYMDTQDVARLTFIAMRNEKASKKLLTFAGPRAWTTQ-EVITLCERLA 290
+++G D ++ + D D+A+ T + + + K + P TQ E++ + E+L
Sbjct: 187 VNIYG-DGNVKVVFADEDDIAKYTAKTLNDPRTLNKTVNIRPPDNVLTQLELVQIWEKLT 245
Query: 291 GQDANVTTV 299
G++ T +
Sbjct: 246 GKELEKTNI 254
>AT2G34460.1 | chr2:14529635-14530732 FORWARD LENGTH=281
Length = 280
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 78/169 (46%), Gaps = 20/169 (11%)
Query: 68 VRPTSILVVGATGTLGRQVVRRALDEGYDVRCLVRP-RPAPADFLRDWGATVVNADLSK- 125
V+ + V GATG G+++V + L G+ V+ VR A F D +V AD+++
Sbjct: 44 VKTKKVFVAGATGQTGKRIVEQLLSRGFAVKAGVRDVEKAKTSFKDDPSLQIVRADVTEG 103
Query: 126 PETIPATLVGIHTVIDCATG-RPEEPIRT---VDWEGKVALIQCAKAMGIQKYVFYSIHN 181
P+ + + + CATG RP I T VD G V L+ + G++K+V S
Sbjct: 104 PDKLAEVIGDDSQAVICATGFRPGFDIFTPWKVDNFGTVNLVDACRKQGVEKFVLVSSIL 163
Query: 182 CDK-------HPEVPLMEI-------KHCTEKFIQDAGLDYLIIRLCGF 216
+ +P + + K EK+I+ +G++Y I+R G
Sbjct: 164 VNGAAMGQILNPAYLFLNLFGLTLVAKLQAEKYIKKSGINYTIVRPGGL 212
>AT1G16720.1 | chr1:5723161-5726248 FORWARD LENGTH=599
Length = 598
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 72 SILVVGATGTLGRQVVRRALDEGYDVRCLVRPRPAPADFLRDWGATVVNADLSKPETIPA 131
++LVVGAT +GR VVR+ + GY V+ LVR + + +V D+ +P T+ +
Sbjct: 164 TVLVVGATSRIGRIVVRKLMLRGYTVKALVRKQDEEVMSMLPRSVDIVVGDVGEPSTLKS 223
Query: 132 TLVGIHTVIDCATGR 146
+ +I CAT R
Sbjct: 224 AVESCSKIIYCATAR 238
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.323 0.137 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,119,500
Number of extensions: 295536
Number of successful extensions: 612
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 620
Number of HSP's successfully gapped: 6
Length of query: 386
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 286
Effective length of database: 8,364,969
Effective search space: 2392381134
Effective search space used: 2392381134
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 113 (48.1 bits)