BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0553800 Os08g0553800|AK066697
         (386 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0553800  NmrA-like family protein                            712   0.0  

>Os08g0553800 NmrA-like family protein
          Length = 386

 Score =  712 bits (1839), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/343 (100%), Positives = 343/343 (100%)

Query: 44  KGCRLVVTCNAQTAVPTSIAQGTPVRPTSILVVGATGTLGRQVVRRALDEGYDVRCLVRP 103
           KGCRLVVTCNAQTAVPTSIAQGTPVRPTSILVVGATGTLGRQVVRRALDEGYDVRCLVRP
Sbjct: 44  KGCRLVVTCNAQTAVPTSIAQGTPVRPTSILVVGATGTLGRQVVRRALDEGYDVRCLVRP 103

Query: 104 RPAPADFLRDWGATVVNADLSKPETIPATLVGIHTVIDCATGRPEEPIRTVDWEGKVALI 163
           RPAPADFLRDWGATVVNADLSKPETIPATLVGIHTVIDCATGRPEEPIRTVDWEGKVALI
Sbjct: 104 RPAPADFLRDWGATVVNADLSKPETIPATLVGIHTVIDCATGRPEEPIRTVDWEGKVALI 163

Query: 164 QCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKHCTEKFIQDAGLDYLIIRLCGFMQGLIGQ 223
           QCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKHCTEKFIQDAGLDYLIIRLCGFMQGLIGQ
Sbjct: 164 QCAKAMGIQKYVFYSIHNCDKHPEVPLMEIKHCTEKFIQDAGLDYLIIRLCGFMQGLIGQ 223

Query: 224 YAVPILEEKSVWGTDAPTRIAYMDTQDVARLTFIAMRNEKASKKLLTFAGPRAWTTQEVI 283
           YAVPILEEKSVWGTDAPTRIAYMDTQDVARLTFIAMRNEKASKKLLTFAGPRAWTTQEVI
Sbjct: 224 YAVPILEEKSVWGTDAPTRIAYMDTQDVARLTFIAMRNEKASKKLLTFAGPRAWTTQEVI 283

Query: 284 TLCERLAGQDANVTTVPVAVLRFTRQLTRFFQWTNDVADRLAFSEVLSSDTIFSVPMNDT 343
           TLCERLAGQDANVTTVPVAVLRFTRQLTRFFQWTNDVADRLAFSEVLSSDTIFSVPMNDT
Sbjct: 284 TLCERLAGQDANVTTVPVAVLRFTRQLTRFFQWTNDVADRLAFSEVLSSDTIFSVPMNDT 343

Query: 344 YQLLGVDSKDILTLEKYLQDYFTNILKKLKDLKAQSKQTDIFF 386
           YQLLGVDSKDILTLEKYLQDYFTNILKKLKDLKAQSKQTDIFF
Sbjct: 344 YQLLGVDSKDILTLEKYLQDYFTNILKKLKDLKAQSKQTDIFF 386



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.323    0.137    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 11,151,164
Number of extensions: 470966
Number of successful extensions: 1057
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1057
Number of HSP's successfully gapped: 1
Length of query: 386
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 283
Effective length of database: 11,657,759
Effective search space: 3299145797
Effective search space used: 3299145797
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 157 (65.1 bits)