Os08g0550100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 26S proteasome subunit RPN3a.
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Os08g0550100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 26S proteasome subunit RPN3a.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 21.36 | 0.217 | 12.5 | 1.05 | 0.205 | -0.638 | -0.244 | 1.09 | 0.274 | 0.5 | 20.89 | 1259 | -- | -- |
| 22.1 | 0.219 | 12.6 | 0.758 | 0.202 | -0.654 | -0.195 | -- | 0.197 | 0.0696 | 18.03 | 1177 | -- | -- |
| 21.6 | 0.216 | 12.5 | 1.04 | 0.202 | -0.635 | -- | 1.03 | 0.272 | 0.398 | 20.98 | 1275 | -- | -- |
| 22.15 | 0.219 | 12.6 | 0.768 | 0.226 | -0.663 | -- | -- | 0.198 | 0.0782 | 18.14 | 1161 | -- | -- |
| 23.14 | 0.224 | 12.5 | 1.05 | -- | -0.597 | -- | 0.995 | 0.272 | -- | 20.6 | 1555 | -- | -- |
| 32.09 | 0.266 | 12.6 | 0.536 | 0.127 | -- | -0.2 | -- | 0.0574 | 24 | -- | -- | -- | -- |
| 32.26 | 0.266 | 12.6 | 0.545 | 0.129 | -- | -- | -- | 0.0586 | 23.6 | -- | -- | -- | -- |
| 23.86 | 0.228 | 12.6 | 0.775 | -- | -0.632 | -- | -- | 0.2 | -- | 17.71 | 1549 | -- | -- |
| 35.69 | 0.278 | 12.6 | -- | 0.237 | -0.409 | -- | -- | 0.0515 | 22.8 | 20.23 | 905 | -- | -- |
| 33.3 | 0.27 | 12.6 | 0.548 | -- | -- | -- | -- | 0.0601 | -- | -- | -- | -- | -- |
| 40.07 | 0.296 | 12.6 | -- | 0.135 | -- | -- | -- | -0.00206 | 23.8 | -- | -- | -- | -- |
| 37.22 | 0.284 | 12.6 | -- | -- | -0.32 | -- | -- | 0.0627 | -- | 21.4 | 1509 | -- | -- |
| 41.22 | 0.3 | 12.6 | -- | -- | -- | -- | -- | -0.000757 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 20.84 | temperature | 20 | 1440 | > th | dose dependent | rect. | 13 | 12 |
| 28 | 20.97 | temperature | 10 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 29 | 20.97 | temperature | 20 | 720 | > th | dose dependent | rect. | 15 | 18 |
| 35 | 20.99 | temperature | 20 | 1440 | > th | dose dependent | sin | 16 | NA |
| 43 | 21.00 | temperature | 25 | 1440 | > th | dose independent | rect. | 11 | 13 |
| 70 | 21.11 | temperature | 25 | 1440 | < th | dose independent | rect. | 10 | 14 |
| 93 | 21.17 | temperature | 25 | 1440 | > th | dose independent | sin | 18 | NA |
| 98 | 21.18 | temperature | 25 | 1440 | > th | dose independent | rect. | 14 | 9 |
| 100 | 21.18 | temperature | 25 | 1440 | < th | dose independent | rect. | 13 | 11 |
| 132 | 21.24 | temperature | 25 | 1440 | < th | dose independent | sin | 17 | NA |
| 302 | 21.58 | temperature | 20 | 1440 | > th | dose dependent | no | NA | NA |
| 310 | 21.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 3 | 22 |
| 312 | 21.58 | temperature | 20 | 1440 | > th | dose dependent | rect. | 1 | 23 |
| 328 | 21.59 | temperature | 20 | 1440 | > th | dose dependent | rect. | 22 | 23 |
| 347 | 21.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 23 |
| 417 | 21.66 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 23 |
| 515 | 21.74 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 10 |
| 738 | 21.90 | temperature | 30 | 1440 | < th | dose dependent | sin | 17 | NA |
| 826 | 21.96 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 2 |