BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0550100 Os08g0550100|AK061287
(486 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G20200.1 | chr1:7001409-7004154 REVERSE LENGTH=489 667 0.0
AT1G75990.1 | chr1:28524623-28526718 REVERSE LENGTH=488 658 0.0
>AT1G20200.1 | chr1:7001409-7004154 REVERSE LENGTH=489
Length = 488
Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/485 (67%), Positives = 373/485 (76%), Gaps = 1/485 (0%)
Query: 3 DVQMSDSEXXXXXXXXXXXXXLHHLKEIASVIEAGSLSKEVRRISXXXXXXXXXXXXXXX 62
DV+M D+ + +LKEIA++I+ GS +KEVRRI+
Sbjct: 4 DVEMKDNNTPSQSIISSSTSTMQNLKEIAALIDTGSYTKEVRRIARAVRLTIGLRQKLTG 63
Query: 63 XXXXXFLAFALPPSSEAYTRLTSLVPKEDDTEMDIDMAAPATQISIKHGLP-EIEIYCYL 121
FL FAL P SEA++RL+S VPK D+ +M++D A+ ATQ + LP E+EIYCY
Sbjct: 64 SVLSSFLDFALVPGSEAHSRLSSFVPKGDEHDMEVDTASSATQAAPSKHLPAELEIYCYF 123
Query: 122 LVLIFLIDQKKYDDAKACANASIARLKNLNRRTVDVLASRLYFYYSYVHELTNSLAEIRG 181
+VL+FLIDQKKY++AKAC++ASIARLKN+NRRT+DV+ASRLYFYYS +E T LAEIRG
Sbjct: 124 IVLLFLIDQKKYNEAKACSSASIARLKNVNRRTIDVIASRLYFYYSLSYEQTGDLAEIRG 183
Query: 182 NLLALHRMATLHRDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYL 241
LLALH ATL DELGQET DQAEKLRSKAPRFEAHSNQQFCRYL
Sbjct: 184 TLLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYL 243
Query: 242 FYLGKIRTIQLEYTDAKESLLQAARKAPITARGFRIQCNKWAIIVRLLLGEIPERTVFMQ 301
FYLGKIRTIQLEYTDAKESLLQAARKAPI A GFRIQCNKWAI+VRLLLGEIPER++F Q
Sbjct: 244 FYLGKIRTIQLEYTDAKESLLQAARKAPIAALGFRIQCNKWAILVRLLLGEIPERSIFTQ 303
Query: 302 KGMKEALTPYFELTNAVRIGDLELFRAVADKFVSTFSADRTRNLIVRLRHNVIRTGLRNI 361
KGM++AL PYFELTNAVRIGDLELFR V +KF+ TF+ DRT NLIVRLRHNVIRTGLRNI
Sbjct: 304 KGMEKALRPYFELTNAVRIGDLELFRTVQEKFLDTFAQDRTHNLIVRLRHNVIRTGLRNI 363
Query: 362 SISYSRISLADIAKKLRLDSDNPVADAESIVAKAIRDGAIDATIDHANGWMVSKETGDVY 421
SISYSRISL D+AKKLRL+S+NPVADAESIVAKAIRDGAIDATIDH NG MVSKETGD+Y
Sbjct: 364 SISYSRISLPDVAKKLRLNSENPVADAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIY 423
Query: 422 STNEPQIAFNSRIAFCLNMHNEAVKAMRFPPNSHXXXXXXXXXXXXXXXXXXXXXHMAEE 481
STNEPQ AFNSRIAFCLNMHNEAV+A+RFPPN+H HMAEE
Sbjct: 424 STNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESDEKRRERKQQEEELAKHMAEE 483
Query: 482 DDDDF 486
DDDDF
Sbjct: 484 DDDDF 488
>AT1G75990.1 | chr1:28524623-28526718 REVERSE LENGTH=488
Length = 487
Score = 658 bits (1697), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/484 (66%), Positives = 367/484 (75%)
Query: 3 DVQMSDSEXXXXXXXXXXXXXLHHLKEIASVIEAGSLSKEVRRISXXXXXXXXXXXXXXX 62
DV+M D++ L +LKEIA++I+ GS +KEVRRI+
Sbjct: 4 DVEMKDNQTPTQSVVSAPTSTLQNLKEIAALIDTGSYTKEVRRIARAVRLTVGLRRKLTG 63
Query: 63 XXXXXFLAFALPPSSEAYTRLTSLVPKEDDTEMDIDMAAPATQISIKHGLPEIEIYCYLL 122
FL FAL P SEA+TRL+S VPK D+ +M++D A+ +Q KH E+EIYCY +
Sbjct: 64 SVISSFLDFALVPGSEAHTRLSSFVPKSDEHDMEVDTASSNSQAPPKHLPAELEIYCYFI 123
Query: 123 VLIFLIDQKKYDDAKACANASIARLKNLNRRTVDVLASRLYFYYSYVHELTNSLAEIRGN 182
VL+FLIDQKKY++AK C+ ASIARLK++NRRTVDV+AS+LYFYYS +ELTN LAEIR
Sbjct: 124 VLLFLIDQKKYNEAKVCSTASIARLKSVNRRTVDVIASKLYFYYSLSYELTNDLAEIRST 183
Query: 183 LLALHRMATLHRDELGQETXXXXXXXXXXXXXXXDQAEKLRSKAPRFEAHSNQQFCRYLF 242
LLALH ATL DELGQET DQAEKLRSKAPRFEAHSNQQFCRYLF
Sbjct: 184 LLALHHSATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLF 243
Query: 243 YLGKIRTIQLEYTDAKESLLQAARKAPITARGFRIQCNKWAIIVRLLLGEIPERTVFMQK 302
YLGKIRTIQLEYTDAKESLLQAARKAP+ + GFRIQCNKWAIIVRLLLGEIPER++F QK
Sbjct: 244 YLGKIRTIQLEYTDAKESLLQAARKAPVASLGFRIQCNKWAIIVRLLLGEIPERSIFTQK 303
Query: 303 GMKEALTPYFELTNAVRIGDLELFRAVADKFVSTFSADRTRNLIVRLRHNVIRTGLRNIS 362
GM++ L PYFELTNAVRIGDLELF + +KF TF+ DRT NLIVRLRHNVIRTGLRNIS
Sbjct: 304 GMEKTLRPYFELTNAVRIGDLELFGKIQEKFAKTFAEDRTHNLIVRLRHNVIRTGLRNIS 363
Query: 363 ISYSRISLADIAKKLRLDSDNPVADAESIVAKAIRDGAIDATIDHANGWMVSKETGDVYS 422
ISYSRISL D+A+KLRL+S NPVADAESIVAKAIRDGAIDATIDH NG MVSKETGD+YS
Sbjct: 364 ISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNGCMVSKETGDIYS 423
Query: 423 TNEPQIAFNSRIAFCLNMHNEAVKAMRFPPNSHXXXXXXXXXXXXXXXXXXXXXHMAEED 482
TNEPQ AFNSRIAFCLNMHNEAV+A+RFPPN+H +MAEED
Sbjct: 424 TNEPQTAFNSRIAFCLNMHNEAVRALRFPPNTHREKESEEKRREMKQQEEELAKYMAEED 483
Query: 483 DDDF 486
DDDF
Sbjct: 484 DDDF 487
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.321 0.134 0.380
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,992,719
Number of extensions: 273228
Number of successful extensions: 613
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 609
Number of HSP's successfully gapped: 3
Length of query: 486
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 384
Effective length of database: 8,310,137
Effective search space: 3191092608
Effective search space used: 3191092608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 114 (48.5 bits)