Os08g0543600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0543600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 9.39 | 0.144 | 12.1 | 0.286 | 0.23 | 0.664 | 0.0817 | 0.725 | 0.252 | 22.5 | 0.8301 | 1459 | -- | -- |
| 9.5 | 0.144 | 12 | 0.36 | 0.204 | 0.584 | 0.14 | -- | 0.27 | 21.8 | 1.952 | 1496 | -- | -- |
| 9.37 | 0.143 | 12.1 | 0.292 | 0.225 | 0.666 | -- | 0.717 | 0.252 | 22.3 | 0.8305 | 1471 | -- | -- |
| 9.45 | 0.143 | 12 | 0.332 | 0.167 | 0.563 | -- | -- | 0.267 | 21.3 | 1.85 | 1530 | -- | -- |
| 10.5 | 0.151 | 12.1 | 0.287 | -- | 0.829 | -- | 0.847 | 0.254 | -- | 0.87 | 1547 | -- | -- |
| 12.35 | 0.165 | 12.1 | 0.235 | 0.258 | -- | 0.0655 | -- | 0.197 | 22.5 | -- | -- | -- | -- |
| 12.36 | 0.165 | 12.1 | 0.232 | 0.258 | -- | -- | -- | 0.197 | 22.6 | -- | -- | -- | -- |
| 10.73 | 0.153 | 12 | 0.361 | -- | 0.705 | -- | -- | 0.292 | -- | 1.707 | 1553 | -- | -- |
| 12.14 | 0.162 | 12.1 | -- | 0.176 | 0.432 | -- | -- | 0.219 | 21.9 | 2.417 | 1534 | -- | -- |
| 16.46 | 0.19 | 12.1 | 0.237 | -- | -- | -- | -- | 0.198 | -- | -- | -- | -- | -- |
| 13.78 | 0.174 | 12.1 | -- | 0.26 | -- | -- | -- | 0.171 | 22.6 | -- | -- | -- | -- |
| 13.63 | 0.173 | 12.1 | -- | -- | 0.199 | -- | -- | 0.175 | -- | 1.707 | 1553 | -- | -- |
| 17.94 | 0.198 | 12.1 | -- | -- | -- | -- | -- | 0.172 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 9.22 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 11 |
| 2 | 9.22 | temperature | 10 | 1440 | > th | dose dependent | rect. | 13 | 2 |
| 20 | 9.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 19 |
| 21 | 9.24 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 21 |
| 26 | 9.25 | radiation | 1 | 1440 | < th | dose dependent | rect. | 7 | 12 |
| 46 | 9.28 | humidity | 80 | 1440 | < th | dose independent | rect. | 10 | 10 |
| 109 | 9.36 | radiation | 1 | 1440 | < th | dose dependent | sin | 22 | NA |
| 135 | 9.37 | humidity | 70 | 1440 | > th | dose dependent | rect. | 10 | 11 |
| 192 | 9.42 | temperature | 20 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 221 | 9.44 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 23 |
| 242 | 9.44 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 245 | 9.45 | humidity | 80 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 247 | 9.45 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 23 |
| 250 | 9.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 8 |
| 254 | 9.45 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 10 |
| 291 | 9.46 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 20 |
| 293 | 9.47 | humidity | 80 | 1440 | > th | dose independent | sin | 21 | NA |
| 294 | 9.47 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 295 | 9.47 | humidity | 80 | 1440 | > th | dose dependent | rect. | 10 | 4 |
| 313 | 9.47 | temperature | 20 | 270 | > th | dose dependent | rect. | 1 | 19 |
| 316 | 9.48 | humidity | 80 | 1440 | < th | dose independent | sin | 21 | NA |
| 340 | 9.48 | temperature | 10 | 720 | > th | dose dependent | rect. | 19 | 23 |
| 347 | 9.49 | radiation | 1 | 1440 | < th | dose dependent | no | NA | NA |
| 348 | 9.49 | humidity | 70 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 371 | 9.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 3 | 17 |
| 372 | 9.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 1 | 18 |
| 406 | 9.49 | radiation | 1 | 1440 | < th | dose dependent | rect. | 12 | 23 |
| 413 | 9.50 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 414 | 9.50 | humidity | 80 | 1440 | > th | dose independent | rect. | 10 | 4 |
| 416 | 9.50 | radiation | 1 | 1440 | > th | dose independent | rect. | 7 | 12 |
| 467 | 9.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 19 |
| 468 | 9.51 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 21 |
| 470 | 9.51 | wind | 7 | 43200 | > th | dose dependent | rect. | 19 | 2 |
| 487 | 9.52 | radiation | 1 | 1440 | < th | dose independent | rect. | 7 | 12 |
| 499 | 9.52 | humidity | 70 | 1440 | > th | dose dependent | sin | 20 | NA |
| 533 | 9.54 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 4 |
| 534 | 9.54 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 6 |
| 577 | 9.55 | temperature | 20 | 1440 | > th | dose dependent | sin | 20 | NA |
| 667 | 9.57 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 21 |
| 681 | 9.58 | temperature | 30 | 1440 | < th | dose dependent | rect. | 13 | 1 |
| 713 | 9.58 | temperature | 10 | 720 | > th | dose dependent | rect. | 1 | 23 |
| 756 | 9.60 | radiation | 1 | 1440 | > th | dose independent | sin | 22 | NA |
| 792 | 9.61 | radiation | 1 | 1440 | < th | dose independent | sin | 22 | NA |
| 805 | 9.61 | temperature | 10 | 1440 | > th | dose dependent | sin | 21 | NA |
| 830 | 9.61 | humidity | 90 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 838 | 9.61 | temperature | 10 | 720 | > th | dose dependent | rect. | 17 | 22 |
| 855 | 9.62 | radiation | 1 | 1440 | > th | dose independent | rect. | 12 | 18 |
| 896 | 9.62 | temperature | 10 | 720 | > th | dose dependent | rect. | 23 | 23 |
| 905 | 9.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 18 |