BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0543600 Os08g0543600|AK066525
(837 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G53620.1 | chr5:21781217-21785061 FORWARD LENGTH=683 263 4e-70
>AT5G53620.1 | chr5:21781217-21785061 FORWARD LENGTH=683
Length = 682
Score = 263 bits (671), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 155/391 (39%), Positives = 231/391 (59%), Gaps = 30/391 (7%)
Query: 4 AAARKEWRAVPDAPLRSNGADDPGEHGKMGQSEDRAMYEDGGGRLDDYCSITIDGSGGLS 63
A +RKEWRAV D+ ++ D E K+ ++++R +YE+G R D G +
Sbjct: 23 APSRKEWRAVSDSQDTTDYVD--LEQLKLNRTDERTIYENG--REQD---------GYSN 69
Query: 64 EDIIQQRLQSVVHXXXXXXXXXXXXXXXVIAHPQIIEAQRSFXXXXXXXXXXXXXLKEQL 123
+++QQ++ +V +IA +I+E Q ++ ++EQL
Sbjct: 70 SEMLQQQILNVSRKKGELQQLEIELRAQMIARHEIMEIQSNYESQFTEYANAAARMQEQL 129
Query: 124 HEREKYILELEMKLDDKDRELDALKIDHQTVWANQDLLREQTKELATFRRERDNSEAERA 183
HE E+ I E E KL++KDREL A+K+D++ WA + +LREQ KELATFRRERD+SEAER+
Sbjct: 130 HENERSIREAERKLEEKDRELHAIKLDNEAAWAKEGILREQNKELATFRRERDHSEAERS 189
Query: 184 QHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDEQLREAHAWMARVQEMDTLQSQ 243
Q++ +I +LQEH++EKESQ+ L+EQ+R AQ+ I+YKDEQLREA W+AR QE+D LQS
Sbjct: 190 QNIHKISELQEHIQEKESQLSELQEQNRIAQETILYKDEQLREAQGWIARAQEIDALQSS 249
Query: 244 T---MQAELRDRTEQFNQYWISFQQQYVEMQRGFLHTIQQLQLELNELRDRTGAPKDGSQ 300
T +QAELR+RTEQ+NQ W Q+Q+ EM+R +HT+QQLQ EL +R+ G+ +
Sbjct: 250 TNHSLQAELRERTEQYNQLWHGCQRQFAEMERLHVHTVQQLQQELANVREAGGSKTN--- 306
Query: 301 TAQESSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNAXXXXXXXXXLL 360
S S QN GN A+G+ ++ SV SNG + ++ +
Sbjct: 307 ----SGGASQTIQNSGNQFDAHGNSAESANISVHSNGKSADNISSFTSTDDKATQNNRVD 362
Query: 361 GIG-------GFVPSAQIAGMHSYMMHPQGV 384
GI GF+ + Q+ +HS++MH Q +
Sbjct: 363 GISASNLATHGFLQAGQMTPLHSFVMHQQEI 393
Score = 140 bits (354), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 73/139 (52%), Positives = 88/139 (63%), Gaps = 6/139 (4%)
Query: 596 PRIPKEPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKL 655
P E +LLDERSLL CI+R +PAG GRI+IS+TLPNRLGKMLAPLHWHDY+K YGKL
Sbjct: 541 PERNSECALLDERSLLTCILRTIPAG--GRIRISSTLPNRLGKMLAPLHWHDYRKKYGKL 598
Query: 656 DDFVASHPELFVIEGDFIHLREGXXXX--XXXXXXXXXXXXXXXXXPYSLLPSVAVTPVA 713
DDFVASH ELF IE D+I +R+G P S+ VA+TP+A
Sbjct: 599 DDFVASHLELFSIEDDYIQVRDGAQKMVAASAAAAKVAAAAAASSSPNSIY--VAMTPMA 656
Query: 714 QSTRQKRGPVVDSRSSNVM 732
QS K+ +SS+ M
Sbjct: 657 QSQGLKKNDNRVRQSSDFM 675
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.311 0.127 0.361
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 16,919,799
Number of extensions: 702521
Number of successful extensions: 2565
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 2585
Number of HSP's successfully gapped: 2
Length of query: 837
Length of database: 11,106,569
Length adjustment: 107
Effective length of query: 730
Effective length of database: 8,173,057
Effective search space: 5966331610
Effective search space used: 5966331610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 116 (49.3 bits)