BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0543600 Os08g0543600|AK066525
         (837 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0543600  Conserved hypothetical protein                     1598   0.0  

>Os08g0543600 Conserved hypothetical protein
          Length = 837

 Score = 1598 bits (4139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 779/837 (93%), Positives = 779/837 (93%)

Query: 1   MDAAAARKEWRAVPDAPLRSNGADDPGEHGKMGQSEDRAMYEDGGGRLDDYCSITIDGSG 60
           MDAAAARKEWRAVPDAPLRSNGADDPGEHGKMGQSEDRAMYEDGGGRLDDYCSITIDGSG
Sbjct: 1   MDAAAARKEWRAVPDAPLRSNGADDPGEHGKMGQSEDRAMYEDGGGRLDDYCSITIDGSG 60

Query: 61  GLSEDIIQQRLQSVVHXXXXXXXXXXXXXXXVIAHPQIIEAQRSFXXXXXXXXXXXXXLK 120
           GLSEDIIQQRLQSVVH               VIAHPQIIEAQRSF             LK
Sbjct: 61  GLSEDIIQQRLQSVVHQREELQRLEMELRAQVIAHPQIIEAQRSFEAAAKEHVTAAAKLK 120

Query: 121 EQLHEREKYILELEMKLDDKDRELDALKIDHQTVWANQDLLREQTKELATFRRERDNSEA 180
           EQLHEREKYILELEMKLDDKDRELDALKIDHQTVWANQDLLREQTKELATFRRERDNSEA
Sbjct: 121 EQLHEREKYILELEMKLDDKDRELDALKIDHQTVWANQDLLREQTKELATFRRERDNSEA 180

Query: 181 ERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDEQLREAHAWMARVQEMDTL 240
           ERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDEQLREAHAWMARVQEMDTL
Sbjct: 181 ERAQHLKQIHDLQEHLREKESQMLALEEQHRAAQDNIIYKDEQLREAHAWMARVQEMDTL 240

Query: 241 QSQTMQAELRDRTEQFNQYWISFQQQYVEMQRGFLHTIQQLQLELNELRDRTGAPKDGSQ 300
           QSQTMQAELRDRTEQFNQYWISFQQQYVEMQRGFLHTIQQLQLELNELRDRTGAPKDGSQ
Sbjct: 241 QSQTMQAELRDRTEQFNQYWISFQQQYVEMQRGFLHTIQQLQLELNELRDRTGAPKDGSQ 300

Query: 301 TAQESSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNAXXXXXXXXXLL 360
           TAQESSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNA         LL
Sbjct: 301 TAQESSAESTLGQNKGNNMAANGSGTTDSSQSVKSNGVPDCSTKGNSNASPVPVVPSSLL 360

Query: 361 GIGGFVPSAQIAGMHSYMMHPQGVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQ 420
           GIGGFVPSAQIAGMHSYMMHPQGVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQ
Sbjct: 361 GIGGFVPSAQIAGMHSYMMHPQGVPPSLASPNSAVPQFGSFQSQSTIQPNMQWPNQQEAQ 420

Query: 421 NASQTPDETNYHTSPPDQKALQQAAGNNDELSLKQNQATRAEHLTATAHGKQQQQQRFPS 480
           NASQTPDETNYHTSPPDQKALQQAAGNNDELSLKQNQATRAEHLTATAHGKQQQQQRFPS
Sbjct: 421 NASQTPDETNYHTSPPDQKALQQAAGNNDELSLKQNQATRAEHLTATAHGKQQQQQRFPS 480

Query: 481 VVSESTHEQKLQVVESNVTEHLVYNEQQKAQDSSSIVSPIRKFEHQEQTNEFKDEKVASG 540
           VVSESTHEQKLQVVESNVTEHLVYNEQQKAQDSSSIVSPIRKFEHQEQTNEFKDEKVASG
Sbjct: 481 VVSESTHEQKLQVVESNVTEHLVYNEQQKAQDSSSIVSPIRKFEHQEQTNEFKDEKVASG 540

Query: 541 NQSEEQVARHQHKASDFDASTTQIHLKGGAAEFTANVGNQTDTHTSAGGGLGSLLPRIPK 600
           NQSEEQVARHQHKASDFDASTTQIHLKGGAAEFTANVGNQTDTHTSAGGGLGSLLPRIPK
Sbjct: 541 NQSEEQVARHQHKASDFDASTTQIHLKGGAAEFTANVGNQTDTHTSAGGGLGSLLPRIPK 600

Query: 601 EPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKLDDFVA 660
           EPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKLDDFVA
Sbjct: 601 EPSLLDERSLLACIVRAVPAGPDGRIKISTTLPNRLGKMLAPLHWHDYKKHYGKLDDFVA 660

Query: 661 SHPELFVIEGDFIHLREGXXXXXXXXXXXXXXXXXXXXXPYSLLPSVAVTPVAQSTRQKR 720
           SHPELFVIEGDFIHLREG                     PYSLLPSVAVTPVAQSTRQKR
Sbjct: 661 SHPELFVIEGDFIHLREGAQQIISATTAAAKIAAVASSAPYSLLPSVAVTPVAQSTRQKR 720

Query: 721 GPVVDSRSSNVMPSRNGSTTASFGDQFDKGGHIPKPNDSVGYNIVQGIGDVTIASKVKDI 780
           GPVVDSRSSNVMPSRNGSTTASFGDQFDKGGHIPKPNDSVGYNIVQGIGDVTIASKVKDI
Sbjct: 721 GPVVDSRSSNVMPSRNGSTTASFGDQFDKGGHIPKPNDSVGYNIVQGIGDVTIASKVKDI 780

Query: 781 QENGFSDEVRPGQSSMHAVSANGVRQERSGLPAGNTRHGYGGKQQGRSTGPAYISRR 837
           QENGFSDEVRPGQSSMHAVSANGVRQERSGLPAGNTRHGYGGKQQGRSTGPAYISRR
Sbjct: 781 QENGFSDEVRPGQSSMHAVSANGVRQERSGLPAGNTRHGYGGKQQGRSTGPAYISRR 837



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.311    0.127    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 27,501,630
Number of extensions: 1168703
Number of successful extensions: 3900
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 3896
Number of HSP's successfully gapped: 1
Length of query: 837
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 728
Effective length of database: 11,344,475
Effective search space: 8258777800
Effective search space used: 8258777800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 160 (66.2 bits)