Os08g0526300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : tRNA-binding arm domain containing protein.
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Os08g0526300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : tRNA-binding arm domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 22.21 | 0.221 | 12.6 | -0.591 | 0.313 | -1.35 | -0.41 | 0.2 | -0.328 | 22 | 29.93 | 31 | -- | -- |
| 22.26 | 0.22 | 12.6 | -0.556 | 0.312 | -1.35 | -0.374 | -- | -0.32 | 22 | 29.9 | 31 | -- | -- |
| 22.76 | 0.222 | 12.6 | -0.533 | 0.316 | -1.37 | -- | -0.0729 | -0.323 | 22.3 | 29.84 | 31 | -- | -- |
| 22.77 | 0.222 | 12.6 | -0.546 | 0.317 | -1.37 | -- | -- | -0.323 | 22.3 | 29.88 | 31 | -- | -- |
| 23.36 | 0.225 | 12.6 | -0.589 | -- | -1.35 | -- | 0.164 | -0.314 | -- | 30.35 | 302 | -- | -- |
| 47.93 | 0.325 | 12.5 | -0.216 | 0.42 | -- | -0.0721 | -- | -0.0522 | 17.3 | -- | -- | -- | -- |
| 47.94 | 0.324 | 12.5 | -0.216 | 0.42 | -- | -- | -- | -0.0525 | 17.2 | -- | -- | -- | -- |
| 23.4 | 0.225 | 12.6 | -0.553 | -- | -1.38 | -- | -- | -0.321 | -- | 30.19 | 302 | -- | -- |
| 29.82 | 0.254 | 12.5 | -- | 0.292 | -1.14 | -- | -- | -0.22 | 21.2 | 30.02 | 29 | -- | -- |
| 57.15 | 0.353 | 12.5 | -0.23 | -- | -- | -- | -- | -0.0631 | -- | -- | -- | -- | -- |
| 49.16 | 0.328 | 12.5 | -- | 0.424 | -- | -- | -- | -0.0285 | 17.2 | -- | -- | -- | -- |
| 31.41 | 0.261 | 12.5 | -- | -- | -1.3 | -- | -- | -0.184 | -- | 47.13 | 284 | -- | -- |
| 58.55 | 0.357 | 12.5 | -- | -- | -- | -- | -- | -0.0375 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 21.65 | temperature | 30 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 3 | 22.04 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 5 | 22.16 | temperature | 30 | 30 | < th | dose dependent | rect. | 11 | 23 |
| 7 | 22.17 | temperature | 15 | 720 | > th | dose dependent | rect. | 21 | 21 |
| 9 | 22.21 | temperature | 30 | 30 | < th | dose dependent | no | NA | NA |
| 10 | 22.23 | temperature | 30 | 30 | < th | dose dependent | rect. | 13 | 23 |
| 12 | 22.24 | temperature | 30 | 270 | < th | dose dependent | rect. | 7 | 23 |
| 14 | 22.26 | temperature | 30 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 17 | 22.29 | temperature | 30 | 30 | < th | dose dependent | rect. | 15 | 23 |
| 20 | 22.33 | temperature | 30 | 30 | < th | dose dependent | rect. | 19 | 23 |
| 21 | 22.35 | temperature | 30 | 270 | < th | dose dependent | rect. | 24 | 23 |
| 24 | 22.37 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 47 | 22.86 | temperature | 30 | 270 | < th | dose dependent | rect. | 17 | 23 |
| 54 | 22.94 | temperature | 15 | 270 | > th | dose dependent | rect. | 3 | 23 |
| 61 | 23.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 19 | 21 |
| 65 | 23.04 | temperature | 15 | 270 | > th | dose dependent | rect. | 14 | 23 |
| 66 | 23.05 | temperature | 30 | 720 | < th | dose dependent | rect. | 1 | 20 |
| 70 | 23.07 | temperature | 10 | 270 | > th | dose dependent | no | NA | NA |
| 72 | 23.08 | temperature | 30 | 10 | < th | dose dependent | rect. | 21 | 23 |
| 96 | 23.20 | temperature | 10 | 30 | > th | dose dependent | no | NA | NA |
| 146 | 23.41 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 147 | 23.41 | temperature | 30 | 10 | < th | dose dependent | rect. | 1 | 23 |
| 202 | 23.63 | temperature | 30 | 90 | < th | dose dependent | rect. | 3 | 23 |
| 227 | 23.72 | temperature | 30 | 10 | < th | dose dependent | rect. | 3 | 23 |
| 249 | 23.81 | temperature | 30 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 259 | 23.86 | temperature | 20 | 10 | > th | dose dependent | rect. | 23 | 23 |
| 301 | 24.00 | temperature | 15 | 720 | > th | dose dependent | rect. | 10 | 23 |
| 302 | 24.01 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 8 |
| 320 | 24.05 | temperature | 30 | 1440 | < th | dose dependent | sin | 1 | NA |
| 482 | 24.40 | temperature | 15 | 720 | > th | dose dependent | sin | 2 | NA |
| 539 | 24.51 | temperature | 10 | 1440 | > th | dose dependent | rect. | 4 | 11 |
| 584 | 24.56 | temperature | 30 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 648 | 24.64 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 14 |
| 661 | 24.65 | temperature | 25 | 1440 | > th | dose independent | sin | 23 | NA |
| 662 | 24.65 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 14 |
| 674 | 24.66 | temperature | 10 | 1440 | > th | dose dependent | rect. | 8 | 6 |
| 682 | 24.67 | temperature | 25 | 1440 | < th | dose independent | sin | 23 | NA |
| 698 | 24.68 | temperature | 25 | 1440 | < th | dose independent | rect. | 7 | 8 |
| 748 | 24.71 | temperature | 10 | 1440 | > th | dose dependent | rect. | 11 | 2 |
| 805 | 24.76 | temperature | 25 | 1440 | > th | dose independent | rect. | 7 | 8 |
| 914 | 24.85 | temperature | 25 | 1440 | > th | dose independent | rect. | 6 | 10 |