Os08g0517700
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Oxysterol-binding protein family protein.
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Os08g0517700 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Oxysterol-binding protein family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 107.05 | 0.486 | 6.62 | -2.23 | 1.36 | 2.39 | -1.36 | 6.67 | -1.01 | 5.57 | 0.604 | 4386 | -- | -- |
| 144.07 | 0.559 | 6.45 | -1.62 | 1.3 | 0.947 | -0.855 | -- | -0.676 | 5.32 | 13.88 | 8936 | -- | -- |
| 109.74 | 0.488 | 6.61 | -2.22 | 1.42 | 2.42 | -- | 6.77 | -1.05 | 5.19 | 0.2694 | 4335 | -- | -- |
| 135.36 | 0.542 | 6.45 | -1.31 | 1.38 | 1.26 | -- | -- | -0.782 | 4.68 | 3.129 | 8510 | -- | -- |
| 146.6 | 0.564 | 6.59 | -1.58 | -- | 3.11 | -- | 5.82 | -0.911 | -- | 0.1916 | 4958 | -- | -- |
| 154.69 | 0.583 | 6.52 | -1.52 | 1.39 | -- | -1.2 | -- | -1.05 | 5.21 | -- | -- | -- | -- |
| 158.2 | 0.589 | 6.52 | -1.52 | 1.38 | -- | -- | -- | -1.05 | 5.11 | -- | -- | -- | -- |
| 145.64 | 0.562 | 6.45 | -1.14 | -- | 2.41 | -- | -- | -0.674 | -- | 3.154 | 4981 | -- | -- |
| 111.11 | 0.491 | 6.4 | -- | 1.37 | 1.52 | -- | -- | -0.508 | 5.3 | 0.4682 | 41837 | -- | -- |
| 257.73 | 0.75 | 6.53 | -1.47 | -- | -- | -- | -- | -1.01 | -- | -- | -- | -- | -- |
| 219 | 0.692 | 6.48 | -- | 1.35 | -- | -- | -- | -0.877 | 5.15 | -- | -- | -- | -- |
| 176.19 | 0.618 | 6.43 | -- | -- | 2.64 | -- | -- | -0.545 | -- | 2.227 | 4987 | -- | -- |
| 314.71 | 0.828 | 6.49 | -- | -- | -- | -- | -- | -0.848 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 101.56 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 6 |
| 2 | 101.71 | radiation | 40 | 14400 | < th | dose dependent | rect. | 18 | 8 |
| 3 | 101.77 | radiation | 40 | 4320 | < th | dose dependent | rect. | 18 | 3 |
| 18 | 102.46 | radiation | 1 | 43200 | < th | dose dependent | rect. | 19 | 10 |
| 24 | 102.71 | radiation | 1 | 43200 | < th | dose dependent | rect. | 22 | 7 |
| 38 | 103.19 | humidity | 80 | 43200 | > th | dose independent | rect. | 11 | 3 |
| 40 | 103.24 | humidity | 80 | 43200 | > th | dose dependent | rect. | 10 | 2 |
| 42 | 103.26 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 46 | 103.33 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 48 | 103.36 | radiation | 1 | 43200 | < th | dose dependent | rect. | 4 | 1 |
| 61 | 103.66 | humidity | 90 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 67 | 103.76 | humidity | 90 | 43200 | > th | dose independent | rect. | 16 | 13 |
| 70 | 103.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 11 |
| 96 | 103.98 | humidity | 80 | 43200 | < th | dose independent | rect. | 11 | 4 |
| 99 | 104.00 | humidity | 80 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 103 | 104.01 | humidity | 90 | 43200 | > th | dose independent | sin | 10 | NA |
| 128 | 104.09 | humidity | 90 | 43200 | > th | dose dependent | rect. | 16 | 13 |
| 165 | 104.22 | humidity | 90 | 43200 | > th | dose dependent | rect. | 2 | 6 |
| 175 | 104.25 | humidity | 90 | 43200 | > th | dose independent | rect. | 22 | 5 |
| 194 | 104.29 | humidity | 90 | 43200 | > th | dose dependent | sin | 11 | NA |
| 203 | 104.31 | atmosphere | 1005 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 296 | 104.48 | temperature | 20 | 14400 | > th | dose dependent | rect. | 2 | 1 |
| 321 | 104.53 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 11 |
| 381 | 104.63 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 20 |
| 395 | 104.66 | atmosphere | 1005 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 402 | 104.66 | humidity | 90 | 43200 | > th | dose dependent | rect. | 23 | 17 |
| 446 | 104.76 | atmosphere | 1010 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 454 | 104.77 | temperature | 20 | 14400 | > th | dose dependent | rect. | 23 | 4 |
| 458 | 104.78 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 1 |
| 541 | 104.90 | temperature | 30 | 14400 | < th | dose dependent | rect. | 2 | 1 |
| 600 | 104.99 | humidity | 90 | 43200 | > th | dose dependent | no | NA | NA |
| 617 | 105.03 | humidity | 90 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 658 | 105.12 | humidity | 90 | 43200 | > th | dose independent | rect. | 23 | 20 |
| 674 | 105.16 | humidity | 90 | 43200 | < th | dose independent | rect. | 23 | 12 |
| 681 | 105.18 | humidity | 90 | 43200 | < th | dose independent | sin | 12 | NA |
| 700 | 105.21 | humidity | 90 | 43200 | < th | dose independent | rect. | 21 | 6 |
| 753 | 105.32 | temperature | 25 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 771 | 105.35 | temperature | 25 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 844 | 105.48 | humidity | 90 | 43200 | > th | dose independent | no | NA | NA |
| 851 | 105.49 | temperature | 20 | 14400 | > th | dose dependent | rect. | 5 | 1 |
| 861 | 105.51 | humidity | 90 | 43200 | < th | dose independent | rect. | 17 | 18 |
| 869 | 105.52 | humidity | 90 | 43200 | < th | dose independent | rect. | 9 | 20 |
| 959 | 105.72 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 23 |
| 964 | 105.73 | radiation | 1 | 43200 | < th | dose dependent | rect. | 6 | 2 |