BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0517700 Os08g0517700|AK071151
(388 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0517700 Oxysterol-binding protein family protein 763 0.0
>Os08g0517700 Oxysterol-binding protein family protein
Length = 388
Score = 763 bits (1971), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/388 (96%), Positives = 376/388 (96%)
Query: 1 MVESGSEXXXXXXXXXXXXPLSLEGGLAAELRPANLVQRVLSLFRNVRPGSDLSHFQLPA 60
MVESGSE PLSLEGGLAAELRPANLVQRVLSLFRNVRPGSDLSHFQLPA
Sbjct: 1 MVESGSEAAAATAAAVLTAPLSLEGGLAAELRPANLVQRVLSLFRNVRPGSDLSHFQLPA 60
Query: 61 TFNLPKSQLQLYGEGVYCVGKDYLRRCAKGSDAVERFAAVVGWSISTTRPPIFGFAPYNP 120
TFNLPKSQLQLYGEGVYCVGKDYLRRCAKGSDAVERFAAVVGWSISTTRPPIFGFAPYNP
Sbjct: 61 TFNLPKSQLQLYGEGVYCVGKDYLRRCAKGSDAVERFAAVVGWSISTTRPPIFGFAPYNP 120
Query: 121 VLGETHHVSSGSLHVLLEQVSHRPPVSALHATDDDGEIELVWCQNPIPKFHGTSVEATVK 180
VLGETHHVSSGSLHVLLEQVSHRPPVSALHATDDDGEIELVWCQNPIPKFHGTSVEATVK
Sbjct: 121 VLGETHHVSSGSLHVLLEQVSHRPPVSALHATDDDGEIELVWCQNPIPKFHGTSVEATVK 180
Query: 181 GMRHVKLLKFSENYEIDCPNLLIRLLPAPSAEWSGTVRIVCKESELEAELIYYRSNAFLG 240
GMRHVKLLKFSENYEIDCPNLLIRLLPAPSAEWSGTVRIVCKESELEAELIYYRSNAFLG
Sbjct: 181 GMRHVKLLKFSENYEIDCPNLLIRLLPAPSAEWSGTVRIVCKESELEAELIYYRSNAFLG 240
Query: 241 LGGDPRCVKGKIFSSRSGEIICEIDGHWDRIVSAKDAKTGKVSVLYDAESAIADLKTPVV 300
LGGDPRCVKGKIFSSRSGEIICEIDGHWDRIVSAKDAKTGKVSVLYDAESAIADLKTPVV
Sbjct: 241 LGGDPRCVKGKIFSSRSGEIICEIDGHWDRIVSAKDAKTGKVSVLYDAESAIADLKTPVV 300
Query: 301 RNQEGVSPSESVVVWGEVSDAILKKDWERSSQAKRRVEDTARRLDRERNDKGEVWIPKHF 360
RNQEGVSPSESVVVWGEVSDAILKKDWERSSQAKRRVEDTARRLDRERNDKGEVWIPKHF
Sbjct: 301 RNQEGVSPSESVVVWGEVSDAILKKDWERSSQAKRRVEDTARRLDRERNDKGEVWIPKHF 360
Query: 361 SLSQDKNGSWECSPLEKSVPPAPIIVPS 388
SLSQDKNGSWECSPLEKSVPPAPIIVPS
Sbjct: 361 SLSQDKNGSWECSPLEKSVPPAPIIVPS 388
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.134 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,416,131
Number of extensions: 635782
Number of successful extensions: 1434
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1438
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 285
Effective length of database: 11,657,759
Effective search space: 3322461315
Effective search space used: 3322461315
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 157 (65.1 bits)