Os08g0516000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : UvrB, C-terminal UvrC-binding domain containing protein.
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Os08g0516000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : UvrB, C-terminal UvrC-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 27.1 | 0.245 | 9.67 | 0.258 | 0.531 | -0.88 | -0.0458 | -0.972 | 0.193 | 1.37 | 22.92 | 420 | -- | -- |
| 28.11 | 0.247 | 9.68 | 0.146 | 0.531 | -0.731 | -0.0863 | -- | 0.182 | 1.29 | 22.8 | 413 | -- | -- |
| 26.95 | 0.242 | 9.67 | 0.242 | 0.535 | -1.02 | -- | -1.16 | 0.198 | 1.36 | 22.24 | 398 | -- | -- |
| 28.12 | 0.247 | 9.68 | 0.149 | 0.53 | -0.731 | -- | -- | 0.18 | 1.27 | 22.71 | 410 | -- | -- |
| 41.47 | 0.3 | 9.67 | 0.218 | -- | -0.955 | -- | -0.879 | 0.175 | -- | 22.87 | 828 | -- | -- |
| 33.96 | 0.273 | 9.66 | 0.315 | 0.52 | -- | -0.0217 | -- | 0.279 | 0.9 | -- | -- | -- | -- |
| 33.96 | 0.273 | 9.66 | 0.316 | 0.52 | -- | -- | -- | 0.279 | 0.89 | -- | -- | -- | -- |
| 41.8 | 0.301 | 9.69 | 0.117 | -- | -0.746 | -- | -- | 0.122 | -- | 26.23 | 904 | -- | -- |
| 28.64 | 0.249 | 9.69 | -- | 0.533 | -0.813 | -- | -- | 0.156 | 1.32 | 22.61 | 415 | -- | -- |
| 50.79 | 0.333 | 9.65 | 0.335 | -- | -- | -- | -- | 0.289 | -- | -- | -- | -- | -- |
| 36.59 | 0.283 | 9.67 | -- | 0.525 | -- | -- | -- | 0.244 | 0.917 | -- | -- | -- | -- |
| 42.11 | 0.302 | 9.69 | -- | -- | -0.795 | -- | -- | 0.0999 | -- | 26.3 | 917 | -- | -- |
| 53.75 | 0.342 | 9.66 | -- | -- | -- | -- | -- | 0.252 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.96 | temperature | 20 | 270 | > th | dose independent | rect. | 10 | 22 |
| 11 | 26.77 | temperature | 20 | 270 | < th | dose independent | rect. | 6 | 21 |
| 23 | 27.12 | temperature | 20 | 10 | > th | dose independent | rect. | 12 | 21 |
| 37 | 27.41 | temperature | 20 | 720 | > th | dose independent | sin | 16 | NA |
| 46 | 27.47 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 6 |
| 65 | 27.57 | temperature | 20 | 270 | < th | dose dependent | rect. | 6 | 20 |
| 87 | 27.72 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 20 |
| 88 | 27.73 | temperature | 20 | 270 | > th | dose independent | sin | 14 | NA |
| 118 | 27.85 | temperature | 20 | 720 | < th | dose independent | sin | 17 | NA |
| 128 | 27.90 | temperature | 20 | 720 | < th | dose independent | sin | 21 | NA |
| 154 | 27.97 | temperature | 20 | 270 | > th | dose independent | rect. | 11 | 12 |
| 172 | 28.00 | temperature | 20 | 270 | < th | dose dependent | sin | 21 | NA |
| 192 | 28.06 | temperature | 25 | 720 | < th | dose dependent | rect. | 16 | 11 |
| 225 | 28.16 | temperature | 20 | 270 | > th | dose independent | rect. | 18 | 12 |
| 242 | 28.19 | temperature | 20 | 270 | > th | dose independent | no | NA | NA |
| 264 | 28.21 | temperature | 30 | 720 | < th | dose dependent | rect. | 22 | 5 |
| 278 | 28.23 | temperature | 20 | 270 | < th | dose independent | rect. | 14 | 22 |
| 287 | 28.25 | temperature | 20 | 270 | < th | dose independent | no | NA | NA |
| 302 | 28.26 | temperature | 20 | 270 | < th | dose independent | rect. | 18 | 23 |
| 310 | 28.27 | temperature | 20 | 270 | < th | dose independent | rect. | 11 | 23 |
| 328 | 28.30 | temperature | 20 | 10 | > th | dose independent | sin | 14 | NA |
| 341 | 28.31 | temperature | 30 | 720 | < th | dose dependent | rect. | 23 | 3 |
| 350 | 28.32 | temperature | 20 | 10 | < th | dose independent | rect. | 7 | 21 |
| 376 | 28.35 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 23 |
| 395 | 28.36 | temperature | 25 | 720 | < th | dose dependent | sin | 15 | NA |
| 416 | 28.38 | temperature | 20 | 10 | < th | dose independent | rect. | 10 | 18 |
| 420 | 28.38 | temperature | 20 | 720 | > th | dose independent | rect. | 18 | 22 |
| 589 | 28.58 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 4 |
| 662 | 28.65 | temperature | 20 | 10 | < th | dose independent | rect. | 15 | 13 |
| 675 | 28.66 | temperature | 20 | 1440 | > th | dose independent | rect. | 21 | 1 |
| 707 | 28.67 | temperature | 25 | 270 | < th | dose dependent | rect. | 16 | 20 |
| 723 | 28.69 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 15 |
| 766 | 28.72 | wind | 5 | 4320 | > th | dose dependent | rect. | 20 | 8 |
| 772 | 28.73 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 10 |
| 792 | 28.75 | temperature | 20 | 10 | < th | dose independent | rect. | 18 | 10 |
| 796 | 28.75 | temperature | 20 | 10 | > th | dose independent | rect. | 19 | 14 |
| 800 | 28.75 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 3 |
| 825 | 28.77 | wind | 5 | 4320 | > th | dose dependent | rect. | 17 | 12 |
| 834 | 28.78 | temperature | 20 | 10 | > th | dose independent | rect. | 21 | 12 |
| 836 | 28.78 | temperature | 20 | 1440 | < th | dose independent | rect. | 19 | 14 |
| 946 | 28.84 | wind | 5 | 4320 | > th | dose dependent | rect. | 18 | 10 |
| 950 | 28.85 | temperature | 20 | 10 | > th | dose independent | sin | 10 | NA |