BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0516000 Os08g0516000|AK072130
         (790 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0516000  UvrB, C-terminal UvrC-binding domain containin...   976   0.0  

>Os08g0516000 UvrB, C-terminal UvrC-binding domain containing protein
          Length = 790

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 544/790 (68%), Positives = 544/790 (68%)

Query: 1   MESHXXXXXXXXXXXSLFEGMVLFTPSLSVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MESH           SLFEGMVLFTPSLSV                              
Sbjct: 1   MESHDGGGGGGGDGDSLFEGMVLFTPSLSVDPDPAPPVAEAPDPKPPTPRDDAAVAGADG 60

Query: 61  XXSXXXXXXXLDEDLFSDLTLLSPQSPVDLSGAHQGQDQDHXXXXXXXXXXXXXXXXXXX 120
             S       LDEDLFSDLTLLSPQSPVDLSGAHQGQDQDH                   
Sbjct: 61  AASQQQPPPPLDEDLFSDLTLLSPQSPVDLSGAHQGQDQDHSAAAPPSPVPAPAAPVAVL 120

Query: 121 XXXXXXXXXXXXXXXXXXXXIGYGRSPQXXXXXXXXXXXXXXXXXXXXXXXXXHGSVLPD 180
                               IGYGRSPQ                         HGSVLPD
Sbjct: 121 ARQASSSASSSLRKKKRAVRIGYGRSPQPAPPSPPAVAIAATTATAAATASVIHGSVLPD 180

Query: 181 ASMHHQSAPTIPVHHLEHLDNGVEQAAAVAVVDPDENSLHVKXXXXXXXXXXXXXXXXXX 240
           ASMHHQSAPTIPVHHLEHLDNGVEQAAAVAVVDPDENSLHVK                  
Sbjct: 181 ASMHHQSAPTIPVHHLEHLDNGVEQAAAVAVVDPDENSLHVKEEDGELEEDGGAGAEAMG 240

Query: 241 XXXRLALLRSQISGKLESIQQRATAVAAKRRQLAGRRRKVAEDVGSAASRHKXXXXXXXX 300
              RLALLRSQISGKLESIQQRATAVAAKRRQLAGRRRKVAEDVGSAASRHK        
Sbjct: 241 IEERLALLRSQISGKLESIQQRATAVAAKRRQLAGRRRKVAEDVGSAASRHKDLERELEE 300

Query: 301 XXXXXXXXXXXKISDSLAALEKDKDRLLTALRDAELNYDSVDLELQDVLDSRIXXXXXXX 360
                      KISDSLAALEKDKDRLLTALRDAELNYDSVDLELQDVLDSRI       
Sbjct: 301 ACEAEDFERAEKISDSLAALEKDKDRLLTALRDAELNYDSVDLELQDVLDSRIAAEEEAA 360

Query: 361 XXXXHFAKDATDHTDSASKEAEEISLKEIEGWRXXXXXXXXXXXXXXXXXXXXXAARSGL 420
               HFAKDATDHTDSASKEAEEISLKEIEGWR                     AARSGL
Sbjct: 361 SLLEHFAKDATDHTDSASKEAEEISLKEIEGWRESMELLETKKLETEVESELVLAARSGL 420

Query: 421 EDSIEHLVEDDKREKDMLSKKGDXXXXXXXXXXXXVRLKEAEIAENNAQIQEVQERITAV 480
           EDSIEHLVEDDKREKDMLSKKGD            VRLKEAEIAENNAQIQEVQERITAV
Sbjct: 421 EDSIEHLVEDDKREKDMLSKKGDTLAEELTELLKLVRLKEAEIAENNAQIQEVQERITAV 480

Query: 481 VSRFYGSQTDIDLKLKTLQEAQTKMDSEAQALALKKNEIDSFISLSEQKDSKLREIINDC 540
           VSRFYGSQTDIDLKLKTLQEAQTKMDSEAQALALKKNEIDSFISLSEQKDSKLREIINDC
Sbjct: 481 VSRFYGSQTDIDLKLKTLQEAQTKMDSEAQALALKKNEIDSFISLSEQKDSKLREIINDC 540

Query: 541 SSEAKACQQSVDIRRKLASSILKSREDRIGLLKMEEEILQDIQVLRQQTSDARISLQEIS 600
           SSEAKACQQSVDIRRKLASSILKSREDRIGLLKMEEEILQDIQVLRQQTSDARISLQEIS
Sbjct: 541 SSEAKACQQSVDIRRKLASSILKSREDRIGLLKMEEEILQDIQVLRQQTSDARISLQEIS 600

Query: 601 SRKAVIQQDIATFKQKLSFIDKRGPELEAEKRVAAAARNFKEAGRIAAEAKALYSXXXXX 660
           SRKAVIQQDIATFKQKLSFIDKRGPELEAEKRVAAAARNFKEAGRIAAEAKALYS     
Sbjct: 601 SRKAVIQQDIATFKQKLSFIDKRGPELEAEKRVAAAARNFKEAGRIAAEAKALYSEKEEL 660

Query: 661 XXXXXXXXTDLEVIEKDITATTDKIQECEGLIILKEKESAMTSYKXXXXXXXXXXXXXXX 720
                   TDLEVIEKDITATTDKIQECEGLIILKEKESAMTSYK               
Sbjct: 661 HAKLEKAATDLEVIEKDITATTDKIQECEGLIILKEKESAMTSYKRLRLDAAAARAELTA 720

Query: 721 XXXXXXSEEVEVLRXXXXXXXXXXXXXXTCYDLELDDNEIMFQPVVPIVFITNSTGQHLL 780
                 SEEVEVLR              TCYDLELDDNEIMFQPVVPIVFITNSTGQHLL
Sbjct: 721 ATETDDSEEVEVLRKEAEAAESKAMELKTCYDLELDDNEIMFQPVVPIVFITNSTGQHLL 780

Query: 781 EIASSFGLSP 790
           EIASSFGLSP
Sbjct: 781 EIASSFGLSP 790



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.312    0.128    0.336 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,884,342
Number of extensions: 418639
Number of successful extensions: 1350
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1344
Number of HSP's successfully gapped: 2
Length of query: 790
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 681
Effective length of database: 11,344,475
Effective search space: 7725587475
Effective search space used: 7725587475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)