FiT-DB / Search/ Help/ Sample detail

Os08g0503800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Beta-(1,2)-xylosyltransferase (EC 2.4.2.38).


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 8.27 (0.0221) R2 : 0.00506
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0709 (0.0466) R2dN8 : 0.00653 R2N8 : 0.00506
σ : 0.417
deviance : 79.69
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = < th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
40.33 0.298 8.34 0.913 0.518 6.88 -0.0343 17.6 0.123 7.53 14.92 1700 -- --
41.35 0.302 8.24 0.797 0.522 -1.4 -0.0821 -- 0.144 7.46 14.92 1700 -- --
40.33 0.296 8.34 0.912 0.518 6.89 -- 17.6 0.123 7.55 14.91 1707 -- --
40.36 0.296 8.25 0.712 0.52 -1.42 -- -- 0.123 7.54 14.92 1695 -- --
54.61 0.344 8.35 0.905 -- 6.92 -- 18 0.13 -- 14.86 1638 -- --
45.1 0.315 8.24 0.852 0.532 -- -0.157 -- 0.158 7.6 -- -- -- --
45.17 0.315 8.24 0.849 0.531 -- -- -- 0.158 7.66 -- -- -- --
54.59 0.344 8.26 0.712 -- -1.55 -- -- 0.128 -- 14.89 1632 -- --
50.9 0.332 8.27 -- 0.524 -1.32 -- -- 0.00923 7.61 16.4 2998 -- --
60.36 0.363 8.25 0.856 -- -- -- -- 0.166 -- -- -- -- --
64.16 0.375 8.26 -- 0.538 -- -- -- 0.0635 7.55 -- -- -- --
65.2 0.376 8.29 -- -- -1.41 -- -- 0.0161 -- 16.24 2997 -- --
79.69 0.417 8.27 -- -- -- -- -- 0.0709 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 36.36 radiation 1.0 1440 > th dose independent rect. 10 3
4 36.72 radiation 1.0 1440 < th dose independent rect. 10 4
5 36.72 radiation 1.0 1440 < th dose dependent rect. 10 4
11 36.83 radiation 1.0 1440 < th dose independent rect. 12 2
12 36.83 radiation 1.0 1440 < th dose dependent rect. 12 2
17 37.00 temperature 15.0 270 > th dose independent rect. 18 13
18 37.00 temperature 30.0 30 < th dose independent rect. 5 13
27 37.06 radiation 1.0 1440 > th dose independent rect. 12 2
52 37.47 temperature 15.0 720 > th dose independent rect. 18 6
53 37.48 wind 7.0 720 < th dose independent rect. 15 4
55 37.54 wind 7.0 720 < th dose independent rect. 17 1
58 37.60 temperature 15.0 720 > th dose independent rect. 19 4
60 37.62 temperature 15.0 1440 > th dose independent rect. 6 4
66 37.69 humidity 50.0 30 > th dose dependent rect. 5 13
71 37.86 temperature 15.0 720 > th dose independent rect. 12 10
73 37.93 atmosphere 1015.0 30 < th dose dependent rect. 5 3
74 37.94 humidity 50.0 30 > th dose dependent rect. 5 3
75 37.99 wind 5.0 30 < th dose independent rect. 18 11
78 38.03 radiation 10.0 4320 < th dose dependent rect. 24 5
80 38.05 wind 5.0 30 < th dose independent rect. 16 13
81 38.05 wind 9.0 30 < th dose independent rect. 8 21
83 38.07 temperature 15.0 1440 > th dose independent rect. 6 13
86 38.10 temperature 15.0 1440 > th dose independent rect. 6 18
87 38.11 temperature 15.0 720 > th dose independent rect. 10 14
90 38.12 wind 7.0 270 < th dose independent rect. 6 23
94 38.19 precipitation 0.1 30 < th dose independent rect. 8 21
95 38.19 precipitation 0.1 30 < th dose dependent rect. 8 21
96 38.20 radiation 40.0 30 < th dose dependent rect. 5 3
98 38.23 wind 7.0 30 < th dose independent rect. 5 3
99 38.23 radiation 40.0 30 < th dose independent rect. 5 3
101 38.24 temperature 10.0 30 > th dose independent rect. 5 3
103 38.24 temperature 30.0 30 < th dose independent rect. 5 3
104 38.24 humidity 50.0 30 > th dose independent rect. 5 3
106 38.24 atmosphere 995.0 30 > th dose independent rect. 5 3
107 38.24 atmosphere 1015.0 30 < th dose independent rect. 5 3
109 38.24 temperature 10.0 30 > th dose independent rect. 8 21
110 38.25 precipitation 0.1 30 < th dose independent rect. 5 3
112 38.25 precipitation 0.1 30 < th dose dependent rect. 5 3
114 38.28 temperature 15.0 270 > th dose independent rect. 10 22
123 38.34 temperature 30.0 30 < th dose independent rect. 5 18
127 38.35 wind 9.0 30 < th dose dependent rect. 5 3
131 38.38 atmosphere 1015.0 30 < th dose independent rect. 8 21
133 38.39 temperature 15.0 720 > th dose independent rect. 4 18
134 38.39 temperature 30.0 30 < th dose dependent rect. 5 13
139 38.41 temperature 15.0 1440 > th dose independent rect. 6 16
143 38.42 wind 7.0 720 < th dose independent rect. 15 12
149 38.44 temperature 30.0 30 < th dose independent rect. 5 16
170 38.54 humidity 60.0 30 > th dose independent rect. 5 13
208 38.66 wind 9.0 30 < th dose dependent rect. 18 11
209 38.66 temperature 10.0 30 > th dose dependent rect. 8 21
213 38.67 atmosphere 995.0 30 > th dose independent rect. 8 21
215 38.68 temperature 15.0 1440 > th dose independent rect. 6 11
222 38.70 temperature 15.0 270 > th dose independent rect. 1 23
232 38.73 radiation 10.0 4320 < th dose dependent rect. 3 2
234 38.74 radiation 1.0 4320 < th dose independent rect. 24 5
242 38.76 radiation 10.0 4320 < th dose dependent rect. 19 10
254 38.80 wind 7.0 720 < th dose independent rect. 16 18
258 38.81 temperature 15.0 270 > th dose independent rect. 6 23
298 38.89 wind 7.0 720 < th dose independent rect. 7 20
327 38.97 temperature 30.0 30 < th dose dependent rect. 5 3
329 38.97 wind 9.0 30 < th dose dependent rect. 16 13
341 39.00 wind 1.0 90 > th dose independent rect. 8 21
345 39.00 temperature 10.0 30 > th dose dependent rect. 5 3
357 39.02 radiation 40.0 30 < th dose dependent rect. 5 10
368 39.04 wind 9.0 1440 < th dose independent rect. 6 3
372 39.04 humidity 50.0 1440 > th dose independent rect. 6 3
374 39.04 atmosphere 995.0 1440 > th dose independent rect. 6 3
375 39.04 atmosphere 1015.0 1440 < th dose independent rect. 6 3
379 39.04 temperature 10.0 1440 > th dose independent rect. 9 21
384 39.05 wind 7.0 720 < th dose independent rect. 6 13
403 39.06 humidity 50.0 30 > th dose dependent rect. 5 18
438 39.13 wind 7.0 720 < th dose independent rect. 7 11
445 39.13 wind 9.0 90 < th dose dependent rect. 8 21
466 39.18 wind 9.0 4320 < th dose independent rect. 18 1
477 39.18 atmosphere 1005.0 30 > th dose independent rect. 23 6
503 39.23 radiation 1.0 4320 < th dose independent rect. 3 2
505 39.23 humidity 60.0 30 > th dose independent rect. 5 18
526 39.26 humidity 50.0 30 > th dose dependent rect. 5 16
539 39.29 radiation 1.0 10 > th dose independent rect. 5 3
547 39.29 radiation 1.0 4320 < th dose independent rect. 19 10
559 39.30 precipitation 0.1 270 < th dose independent rect. 6 22
563 39.30 precipitation 0.1 270 < th dose dependent rect. 6 22
565 39.31 temperature 15.0 720 > th dose independent rect. 18 23
580 39.34 temperature 15.0 720 > th dose independent rect. 10 6
590 39.35 radiation 20.0 30 < th dose independent rect. 5 9
591 39.36 humidity 90.0 720 < th dose independent rect. 9 9
595 39.36 humidity 90.0 720 > th dose dependent rect. 9 8
596 39.37 wind 7.0 4320 > th dose independent rect. 17 2
599 39.37 wind 7.0 4320 > th dose dependent rect. 18 1
614 39.40 precipitation 0.1 1440 > th dose independent rect. 6 12
633 39.43 wind 7.0 720 < th dose independent rect. 23 20
634 39.43 humidity 50.0 30 > th dose independent rect. 8 21
671 39.47 precipitation 0.1 1440 < th dose independent rect. 6 12
682 39.47 precipitation 0.1 1440 < th dose dependent rect. 6 12
684 39.48 temperature 15.0 1440 > th dose independent sin 0 NA
685 39.48 humidity 90.0 720 < th dose independent rect. 11 6
711 39.51 humidity 90.0 1440 > th dose independent rect. 9 9
721 39.52 wind 1.0 30 > th dose independent rect. 5 3
724 39.52 wind 5.0 30 < th dose independent rect. 23 6
739 39.53 radiation 20.0 43200 < th dose independent rect. 24 6
757 39.53 radiation 30.0 270 < th dose dependent rect. 3 12
786 39.55 radiation 40.0 30 < th dose dependent rect. 5 6
791 39.56 wind 9.0 720 < th dose dependent rect. 17 1
795 39.56 temperature 30.0 30 < th dose dependent rect. 5 18
803 39.57 atmosphere 995.0 30 > th dose dependent rect. 23 6
805 39.57 precipitation 0.1 1440 > th dose dependent rect. 6 12
807 39.58 radiation 20.0 30 < th dose independent rect. 5 7
808 39.58 wind 5.0 30 < th dose independent rect. 21 8
829 39.59 humidity 90.0 1440 > th dose dependent rect. 10 6
856 39.61 radiation 1.0 30 < th dose dependent sin 10 NA
875 39.63 temperature 15.0 10 > th dose independent rect. 14 18
882 39.64 radiation 40.0 10 < th dose independent rect. 5 18
939 39.68 humidity 90.0 1440 > th dose independent rect. 10 7
950 39.69 temperature 15.0 14400 < th dose independent rect. 5 6
997 39.73 humidity 70.0 14400 > th dose independent rect. 21 9