BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0503800 Os08g0503800|AK101954
         (533 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G55500.1  | chr5:22482386-22484417 FORWARD LENGTH=535          545   e-155

>AT5G55500.1 | chr5:22482386-22484417 FORWARD LENGTH=535
          Length = 534

 Score =  545 bits (1403), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 284/480 (59%), Positives = 339/480 (70%), Gaps = 35/480 (7%)

Query: 88  QKPWPRLPSFLPWTSASVRPPPKHSCEGYFGNGFSRLVDVLPARXXX--XXXWFRCHHSE 145
           QKPWP LPS+LPWT    R  P  SCEGYFGNGF++ VD L  R        WFRC +SE
Sbjct: 56  QKPWPILPSYLPWTPPQ-RNLPTGSCEGYFGNGFTKRVDFLKPRIGGGGEGSWFRCFYSE 114

Query: 146 TLRSSICEGGRVRLDPGLIAMSRGGEPLDQVMGRAEEEELPKYEPGALQV-EAAAKRTG- 203
           TL+SSICEG  +R+ P  I MSRGGE L++VMGR EEEELP +  GA +V E  + R G 
Sbjct: 115 TLQSSICEGRNLRMVPDRIVMSRGGEKLEEVMGRKEEEELPAFRQGAFEVAEEVSSRLGF 174

Query: 204 -----------------PLVEAGFLDAYVPTGGIGMHTMRSLLDSGRVVPPGELHCSQWV 246
                             LV    L+ Y+  GGI  HTMR L+ S R V   +  C +WV
Sbjct: 175 KRHRRFGGGEGGSAVSRRLVNDEMLNEYMQEGGIDRHTMRDLVASIRAVDTNDFVCEEWV 234

Query: 247 EEPTLLVTRFEYANLFHTITDWYSAYVSSRVTDLPNRPNVVFVDGHCKAQLEQTWEALFS 306
           EEPTLLVTRFEYANLFHT+TDWYSAYVSSRVT LPNRP+VVFVDGHC  QLE+TW ALFS
Sbjct: 235 EEPTLLVTRFEYANLFHTVTDWYSAYVSSRVTGLPNRPHVVFVDGHCTTQLEETWTALFS 294

Query: 307 NVTYVKNFSGPVCFRHAILSPLGYETALFKGLSESFSCEGASAESLREKPDHQKTARLSE 366
            + Y KNF+ PVCFRHAILSPLGYETALFKGLS    C+G SA +L + PD ++TAR+SE
Sbjct: 295 GIRYAKNFTKPVCFRHAILSPLGYETALFKGLSGEIDCKGDSAHNLWQNPDDKRTARISE 354

Query: 367 FGEMILASFDL-------LRDDILSSKTSNGL-NVLFVRREDYLAHPRHSGKVESRLSNE 418
           FGEMI A+F L       L   + SS +S  + NVLFVRREDYLAHPRH GKV+SRL NE
Sbjct: 355 FGEMIRAAFGLPVNRHRSLEKPLSSSSSSASVYNVLFVRREDYLAHPRHGGKVQSRLINE 414

Query: 419 KEVYDAIEGW-AKGQ----KCKINVINGLFAHMNMKEQLRAIQEASVVIGAHGAGLTHLV 473
           +EV+D++  W A G     KC IN++NGL AHM+MK+Q+RAIQ+ASV+IGAHGAGLTH+V
Sbjct: 415 EEVFDSLHHWVATGSTGLTKCGINLVNGLLAHMSMKDQVRAIQDASVIIGAHGAGLTHIV 474

Query: 474 SATPDTKVLEIISSMYRRPHFALISHWKSLEYHAINLPGSYARVTDVINELSNILKGFGC 533
           SATP+T + EIIS  ++RPHF LI+ WK LEYHA++L  S A  T VI +L+ I+K  GC
Sbjct: 475 SATPNTTIFEIISVEFQRPHFELIAKWKGLEYHAMHLANSRAEPTAVIEKLTEIMKSLGC 534



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.320    0.135    0.415 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,754,606
Number of extensions: 436795
Number of successful extensions: 910
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 905
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 11,106,569
Length adjustment: 103
Effective length of query: 430
Effective length of database: 8,282,721
Effective search space: 3561570030
Effective search space used: 3561570030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 114 (48.5 bits)