BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0503800 Os08g0503800|AK101954
(533 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0503800 Similar to Beta-(1,2)-xylosyltransferase (EC 2... 991 0.0
>Os08g0503800 Similar to Beta-(1,2)-xylosyltransferase (EC 2.4.2.38)
Length = 533
Score = 991 bits (2561), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 487/533 (91%), Positives = 487/533 (91%)
Query: 1 MMPVRTYXXXXXXXXXXXXRLRRIIPRVLLAVFAIYAVSFAAYLLRHQSXXXXXXXAADP 60
MMPVRTY RLRRIIPRVLLAVFAIYAVSFAAYLLRHQS AADP
Sbjct: 1 MMPVRTYHHHHHHNNSNNHRLRRIIPRVLLAVFAIYAVSFAAYLLRHQSPHPHPHPAADP 60
Query: 61 EXXXXXXXXXXXXXXXXXXXXXEAPSSQKPWPRLPSFLPWTSASVRPPPKHSCEGYFGNG 120
E EAPSSQKPWPRLPSFLPWTSASVRPPPKHSCEGYFGNG
Sbjct: 61 ERDAVDAAGGGGGGGAVDRVRVEAPSSQKPWPRLPSFLPWTSASVRPPPKHSCEGYFGNG 120
Query: 121 FSRLVDVLPARXXXXXXWFRCHHSETLRSSICEGGRVRLDPGLIAMSRGGEPLDQVMGRA 180
FSRLVDVLPAR WFRCHHSETLRSSICEGGRVRLDPGLIAMSRGGEPLDQVMGRA
Sbjct: 121 FSRLVDVLPARGGGGGGWFRCHHSETLRSSICEGGRVRLDPGLIAMSRGGEPLDQVMGRA 180
Query: 181 EEEELPKYEPGALQVEAAAKRTGPLVEAGFLDAYVPTGGIGMHTMRSLLDSGRVVPPGEL 240
EEEELPKYEPGALQVEAAAKRTGPLVEAGFLDAYVPTGGIGMHTMRSLLDSGRVVPPGEL
Sbjct: 181 EEEELPKYEPGALQVEAAAKRTGPLVEAGFLDAYVPTGGIGMHTMRSLLDSGRVVPPGEL 240
Query: 241 HCSQWVEEPTLLVTRFEYANLFHTITDWYSAYVSSRVTDLPNRPNVVFVDGHCKAQLEQT 300
HCSQWVEEPTLLVTRFEYANLFHTITDWYSAYVSSRVTDLPNRPNVVFVDGHCKAQLEQT
Sbjct: 241 HCSQWVEEPTLLVTRFEYANLFHTITDWYSAYVSSRVTDLPNRPNVVFVDGHCKAQLEQT 300
Query: 301 WEALFSNVTYVKNFSGPVCFRHAILSPLGYETALFKGLSESFSCEGASAESLREKPDHQK 360
WEALFSNVTYVKNFSGPVCFRHAILSPLGYETALFKGLSESFSCEGASAESLREKPDHQK
Sbjct: 301 WEALFSNVTYVKNFSGPVCFRHAILSPLGYETALFKGLSESFSCEGASAESLREKPDHQK 360
Query: 361 TARLSEFGEMILASFDLLRDDILSSKTSNGLNVLFVRREDYLAHPRHSGKVESRLSNEKE 420
TARLSEFGEMILASFDLLRDDILSSKTSNGLNVLFVRREDYLAHPRHSGKVESRLSNEKE
Sbjct: 361 TARLSEFGEMILASFDLLRDDILSSKTSNGLNVLFVRREDYLAHPRHSGKVESRLSNEKE 420
Query: 421 VYDAIEGWAKGQKCKINVINGLFAHMNMKEQLRAIQEASVVIGAHGAGLTHLVSATPDTK 480
VYDAIEGWAKGQKCKINVINGLFAHMNMKEQLRAIQEASVVIGAHGAGLTHLVSATPDTK
Sbjct: 421 VYDAIEGWAKGQKCKINVINGLFAHMNMKEQLRAIQEASVVIGAHGAGLTHLVSATPDTK 480
Query: 481 VLEIISSMYRRPHFALISHWKSLEYHAINLPGSYARVTDVINELSNILKGFGC 533
VLEIISSMYRRPHFALISHWKSLEYHAINLPGSYARVTDVINELSNILKGFGC
Sbjct: 481 VLEIISSMYRRPHFALISHWKSLEYHAINLPGSYARVTDVINELSNILKGFGC 533
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.135 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 17,466,820
Number of extensions: 730399
Number of successful extensions: 1688
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1687
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 17,035,801
Length adjustment: 106
Effective length of query: 427
Effective length of database: 11,501,117
Effective search space: 4910976959
Effective search space used: 4910976959
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 158 (65.5 bits)