Os08g0496000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Cytochrome oxidase assembly family protein.
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Os08g0496000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Cytochrome oxidase assembly family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 33.57 | 0.272 | 10.7 | 1.11 | 0.765 | -0.682 | 0.196 | 0.0412 | 0.226 | 12.8 | 21.5 | 1513 | -- | -- |
| 33.55 | 0.27 | 10.7 | 1.1 | 0.768 | -0.695 | 0.197 | -- | 0.222 | 12.8 | 21.42 | 1530 | -- | -- |
| 33.72 | 0.27 | 10.7 | 1.12 | 0.767 | -0.68 | -- | 0.042 | 0.226 | 12.9 | 21.53 | 1530 | -- | -- |
| 33.72 | 0.27 | 10.7 | 1.11 | 0.767 | -0.693 | -- | -- | 0.223 | 12.9 | 21.47 | 1530 | -- | -- |
| 63.19 | 0.37 | 10.7 | 1.07 | -- | -0.697 | -- | 0.0928 | 0.259 | -- | 22.3 | 932 | -- | -- |
| 47.4 | 0.323 | 10.7 | 0.814 | 0.778 | -- | 0.152 | -- | 0.0243 | 12.9 | -- | -- | -- | -- |
| 47.49 | 0.323 | 10.7 | 0.819 | 0.778 | -- | -- | -- | 0.0251 | 12.9 | -- | -- | -- | -- |
| 63.19 | 0.37 | 10.7 | 1.03 | -- | -0.7 | -- | -- | 0.248 | -- | 22.22 | 932 | -- | -- |
| 58.96 | 0.358 | 10.8 | -- | 0.688 | -0.358 | -- | -- | 0.0468 | 13.2 | 22.4 | 617 | -- | -- |
| 85.2 | 0.431 | 10.8 | 0.791 | -- | -- | -- | -- | 0.0106 | -- | -- | -- | -- | -- |
| 65.19 | 0.378 | 10.8 | -- | 0.764 | -- | -- | -- | -0.0661 | 12.8 | -- | -- | -- | -- |
| 88.92 | 0.439 | 10.7 | -- | -- | -0.505 | -- | -- | 0.0791 | -- | 22.31 | 892 | -- | -- |
| 101.69 | 0.471 | 10.8 | -- | -- | -- | -- | -- | -0.0772 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 34.15 | temperature | 25 | 720 | < th | dose dependent | rect. | 5 | 18 |
| 4 | 34.27 | temperature | 25 | 720 | < th | dose dependent | sin | 22 | NA |
| 7 | 34.33 | temperature | 25 | 720 | < th | dose dependent | rect. | 6 | 15 |
| 19 | 34.53 | temperature | 25 | 1440 | < th | dose dependent | rect. | 21 | 1 |
| 20 | 34.54 | wind | 1 | 43200 | > th | dose dependent | rect. | 1 | 1 |
| 23 | 34.60 | temperature | 25 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 35 | 34.66 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 15 |
| 40 | 34.67 | wind | 3 | 43200 | > th | dose independent | rect. | 1 | 1 |
| 45 | 34.68 | wind | 3 | 43200 | < th | dose independent | rect. | 1 | 1 |
| 50 | 34.70 | temperature | 25 | 1440 | < th | dose dependent | sin | 15 | NA |
| 100 | 34.81 | wind | 5 | 43200 | < th | dose dependent | rect. | 1 | 1 |
| 123 | 34.87 | temperature | 20 | 1440 | < th | dose dependent | rect. | 3 | 2 |
| 151 | 34.91 | temperature | 25 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 161 | 34.93 | temperature | 25 | 1440 | < th | dose dependent | no | NA | NA |
| 164 | 34.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 17 | 22 |
| 167 | 34.93 | temperature | 25 | 1440 | < th | dose dependent | rect. | 20 | 23 |
| 423 | 35.40 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 4 |
| 424 | 35.40 | temperature | 10 | 1440 | > th | dose dependent | rect. | 23 | 6 |
| 427 | 35.41 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 3 |
| 470 | 35.47 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 556 | 35.57 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 559 | 35.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 3 | 1 |
| 577 | 35.59 | temperature | 20 | 1440 | > th | dose independent | rect. | 18 | 18 |
| 618 | 35.64 | temperature | 20 | 1440 | > th | dose independent | rect. | 16 | 15 |
| 619 | 35.64 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 653 | 35.67 | temperature | 20 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 689 | 35.70 | temperature | 20 | 1440 | > th | dose independent | rect. | 10 | 21 |
| 716 | 35.72 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 23 |
| 723 | 35.73 | temperature | 20 | 1440 | < th | dose independent | rect. | 16 | 15 |
| 745 | 35.74 | wind | 9 | 14400 | > th | dose dependent | rect. | 5 | 8 |
| 796 | 35.78 | temperature | 20 | 1440 | > th | dose independent | sin | 11 | NA |
| 815 | 35.79 | temperature | 20 | 1440 | < th | dose independent | rect. | 10 | 21 |
| 842 | 35.81 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 866 | 35.82 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 23 |
| 872 | 35.83 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 888 | 35.84 | temperature | 20 | 1440 | > th | dose independent | no | NA | NA |
| 906 | 35.85 | wind | 9 | 14400 | > th | dose independent | rect. | 6 | 6 |
| 932 | 35.87 | temperature | 20 | 1440 | > th | dose independent | rect. | 3 | 23 |
| 946 | 35.88 | temperature | 20 | 1440 | > th | dose independent | rect. | 1 | 23 |
| 969 | 35.90 | wind | 3 | 43200 | < th | dose independent | rect. | 23 | 3 |