BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0496000 Os08g0496000|AK103187
         (482 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0496000  Cytochrome oxidase assembly family protein          818   0.0  
AK120031                                                          250   1e-66

>Os08g0496000 Cytochrome oxidase assembly family protein
          Length = 482

 Score =  818 bits (2114), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/482 (85%), Positives = 414/482 (85%)

Query: 1   MMGSRVAAALLRRGRDQASSLMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 60
           MMGSRVAAALLRRGRDQASSLM                                      
Sbjct: 1   MMGSRVAAALLRRGRDQASSLMAARLPRGAPAPSPAAPRVGSGSVCGCGGGGGLLTGSRS 60

Query: 61  XXXVFSASRLASFHAFRSIGSKTLMGQCTRKMTTTXXXXXXXXXXXXXYSGLKLLVTKGP 120
              VFSASRLASFHAFRSIGSKTLMGQCTRKMTTT             YSGLKLLVTKGP
Sbjct: 61  TGSVFSASRLASFHAFRSIGSKTLMGQCTRKMTTTVAAMNSGVANAAAYSGLKLLVTKGP 120

Query: 121 QAQKAIGIWLFGCATWVFGLVILGGVTRLTRSGLSMTDWKFTGSLPPMSDEEWLLEFEKY 180
           QAQKAIGIWLFGCATWVFGLVILGGVTRLTRSGLSMTDWKFTGSLPPMSDEEWLLEFEKY
Sbjct: 121 QAQKAIGIWLFGCATWVFGLVILGGVTRLTRSGLSMTDWKFTGSLPPMSDEEWLLEFEKY 180

Query: 181 KLSPEYKRVNKGMSLGDFKFIYWMEYGHRMWGRALGFLFSVPFAYFIAKGYVTRQLGLRL 240
           KLSPEYKRVNKGMSLGDFKFIYWMEYGHRMWGRALGFLFSVPFAYFIAKGYVTRQLGLRL
Sbjct: 181 KLSPEYKRVNKGMSLGDFKFIYWMEYGHRMWGRALGFLFSVPFAYFIAKGYVTRQLGLRL 240

Query: 241 SGLFALGAGQGLIGWWMVKSGLEEPASEYVQPRVSPYRLATHLTSAFVIYCGILWTALSV 300
           SGLFALGAGQGLIGWWMVKSGLEEPASEYVQPRVSPYRLATHLTSAFVIYCGILWTALSV
Sbjct: 241 SGLFALGAGQGLIGWWMVKSGLEEPASEYVQPRVSPYRLATHLTSAFVIYCGILWTALSV 300

Query: 301 VMPEPPAGSMNWVNSAAKIKKLAIPVSAVVGITAISGAFVAGNDAGHAYNTFPKMGDTWI 360
           VMPEPPAGSMNWVNSAAKIKKLAIPVSAVVGITAISGAFVAGNDAGHAYNTFPKMGDTWI
Sbjct: 301 VMPEPPAGSMNWVNSAAKIKKLAIPVSAVVGITAISGAFVAGNDAGHAYNTFPKMGDTWI 360

Query: 361 PEDVFAMEPFIRNFFENTSTVQLNHRILATTTLLSVGGLWLAARKVDMHPAIKSLIGSTL 420
           PEDVFAMEPFIRNFFENTSTVQLNHRILATTTLLSVGGLWLAARKVDMHPAIKSLIGSTL
Sbjct: 361 PEDVFAMEPFIRNFFENTSTVQLNHRILATTTLLSVGGLWLAARKVDMHPAIKSLIGSTL 420

Query: 421 GMAALQVTLGISTLLMYVPTSLGSAHQAGAXXXXXXXXXXXXXXRRPSPALLKSLASAVK 480
           GMAALQVTLGISTLLMYVPTSLGSAHQAGA              RRPSPALLKSLASAVK
Sbjct: 421 GMAALQVTLGISTLLMYVPTSLGSAHQAGALTLLSLMILLTHTLRRPSPALLKSLASAVK 480

Query: 481 ST 482
           ST
Sbjct: 481 ST 482



>AK120031 
          Length = 139

 Score =  250 bits (639), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 125/139 (89%), Positives = 125/139 (89%)

Query: 344 DAGHAYNTFPKMGDTWIPEDVFAMEPFIRNFFENTSTVQLNHRILATTTLLSVGGLWLAA 403
           DAGHAYNTFPKMGDTWIPEDVFAMEPFIRNFFENTSTVQLNHRILATTTLLSVGGLWLAA
Sbjct: 1   DAGHAYNTFPKMGDTWIPEDVFAMEPFIRNFFENTSTVQLNHRILATTTLLSVGGLWLAA 60

Query: 404 RKVDMHPAIKSLIGSTLGMAALQVTLGISTLLMYVPTSLGSAHQAGAXXXXXXXXXXXXX 463
           RKVDMHPAIKSLIGSTLGMAALQVTLGISTLLMYVPTSLGSAHQAGA             
Sbjct: 61  RKVDMHPAIKSLIGSTLGMAALQVTLGISTLLMYVPTSLGSAHQAGALTLLSLMILLTHT 120

Query: 464 XRRPSPALLKSLASAVKST 482
            RRPSPALLKSLASAVKST
Sbjct: 121 LRRPSPALLKSLASAVKST 139



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 13,751,966
Number of extensions: 537504
Number of successful extensions: 1027
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 1027
Number of HSP's successfully gapped: 2
Length of query: 482
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 377
Effective length of database: 11,553,331
Effective search space: 4355605787
Effective search space used: 4355605787
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 158 (65.5 bits)