BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0496000 Os08g0496000|AK103187
         (482 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G56090.1  | chr5:22714634-22716605 FORWARD LENGTH=458          590   e-169

>AT5G56090.1 | chr5:22714634-22716605 FORWARD LENGTH=458
          Length = 457

 Score =  590 bits (1522), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 285/414 (68%), Positives = 329/414 (79%), Gaps = 13/414 (3%)

Query: 72  SFHAFRSIGSKTLMGQCT---RKMTTTXXXXXXXXXXXXXYSGLKLLVTKGPQAQKAIGI 128
           SF+  RS+    L GQ     R+M+T                GLKLLVT GPQAQK +GI
Sbjct: 52  SFYGLRSL----LKGQNASMFRRMSTVASISSESK------EGLKLLVTGGPQAQKWVGI 101

Query: 129 WLFGCATWVFGLVILGGVTRLTRSGLSMTDWKFTGSLPPMSDEEWLLEFEKYKLSPEYKR 188
           WLFG A WVF +V+LGGVTRLTRSGLSMTDWKFTG  PP+SDE W  EFEKYK SPEYKR
Sbjct: 102 WLFGSAAWVFSMVVLGGVTRLTRSGLSMTDWKFTGEFPPLSDEAWAKEFEKYKQSPEYKR 161

Query: 189 VNKGMSLGDFKFIYWMEYGHRMWGRALGFLFSVPFAYFIAKGYVTRQLGLRLSGLFALGA 248
           VNKGM+L DFKFIYWMEY HRMWGR LG +F++PF+YF+ KGY+T +LG++LSGLFALGA
Sbjct: 162 VNKGMNLEDFKFIYWMEYAHRMWGRGLGIMFALPFSYFLRKGYITLRLGVQLSGLFALGA 221

Query: 249 GQGLIGWWMVKSGLEEPASEYVQPRVSPYRLATHLTSAFVIYCGILWTALSVVMPEPPAG 308
           GQG IGWWMVKSGLEEP SEY QPRVSPYRLA HLTSAF IYCG+ WTALSVVMPEPPA 
Sbjct: 222 GQGFIGWWMVKSGLEEPPSEYSQPRVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAE 281

Query: 309 SMNWVNSAAKIKKLAIPVSAVVGITAISGAFVAGNDAGHAYNTFPKMGDTWIPEDVFAME 368
           S+ WV  AAK+KKLA+PVS +VGITAISGAFVAGNDAG A+NTFPKMGDTWIP+++F M+
Sbjct: 282 SLAWVRGAAKVKKLALPVSLIVGITAISGAFVAGNDAGRAFNTFPKMGDTWIPDNIFEMK 341

Query: 369 PFIRNFFENTSTVQLNHRILATTTLLSVGGLWLAARKVDMHPAIKSLIGSTLGMAALQVT 428
           P +RNFFENT+TVQL+HR+LATTTL+++G +W   RK+D+HPA+K+LIGST+GM A+QVT
Sbjct: 342 PLLRNFFENTATVQLDHRLLATTTLIAIGTMWWFTRKLDIHPAVKALIGSTVGMTAVQVT 401

Query: 429 LGISTLLMYVPTSLGSAHQAGAXXXXXXXXXXXXXXRRPSPALLKSLASAVKST 482
           LG+STLL YVP SLGSAHQAGA              RRPSP+LLKSL    KS 
Sbjct: 402 LGVSTLLSYVPVSLGSAHQAGALTLLTLMLLLNHTLRRPSPSLLKSLPQVAKSN 455



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.322    0.135    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 8,501,886
Number of extensions: 334757
Number of successful extensions: 696
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 696
Number of HSP's successfully gapped: 1
Length of query: 482
Length of database: 11,106,569
Length adjustment: 102
Effective length of query: 380
Effective length of database: 8,310,137
Effective search space: 3157852060
Effective search space used: 3157852060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 114 (48.5 bits)