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Os08g0492400

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : C2 calcium/lipid-binding region, CaLB domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 7.38 (0.0263) R2 : 0.171
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : 0.666 (0.0693) R2dE : 0.172 R2E : 0.171
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0156 (0.0558) R2dN8 : 0.000187 R2N8 : -0.00131
σ : 0.493
deviance : 111.84
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_____
C
peak time of C : --
E
wheather : humidity
threshold : 80
memory length : 235
response mode : > th
dose dependency : dose dependent
G
type of G : no
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = humidity, response mode = > th, dose dependency = dose dependent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
103.01 0.477 7.37 0.375 0.469 0.931 0.627 -0.0823 0.0616 14.1 72.23 125 -- --
103.01 0.473 7.37 0.368 0.47 0.932 0.687 -- 0.0608 14.2 72.36 127 -- --
103.85 0.475 7.36 0.407 0.442 0.896 -- -0.445 0.0717 13.7 72.01 123 -- --
104.71 0.477 7.36 0.395 0.444 0.894 -- -- 0.0615 13.9 71.88 124 -- --
107.69 0.483 7.37 0.378 -- 0.682 -- -0.618 0.0536 -- 80 222 -- --
122.29 0.518 7.38 0.42 0.348 -- -0.659 -- -0.0262 5.08 -- -- -- --
123.38 0.52 7.38 0.421 0.345 -- -- -- -0.0229 5.28 -- -- -- --
108.66 0.486 7.37 0.355 -- 0.632 -- -- 0.0475 -- 79.23 222 -- --
108.67 0.486 7.37 -- 0.443 0.906 -- -- 0.0229 14 72.79 133 -- --
129.6 0.532 7.38 0.433 -- -- -- -- -0.0143 -- -- -- -- --
128.05 0.529 7.39 -- 0.352 -- -- -- -0.0698 5.24 -- -- -- --
111.84 0.493 7.38 -- -- 0.666 -- -- 0.0156 -- 80 235 -- --
134.55 0.541 7.39 -- -- -- -- -- -0.0624 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 90.71 humidity 80.0 30 > th dose independent rect. 5 15
2 90.93 temperature 10.0 90 > th dose dependent rect. 7 22
3 91.01 humidity 50.0 90 > th dose dependent rect. 5 13
24 93.61 precipitation 0.1 90 < th dose independent rect. 7 22
25 93.61 precipitation 0.1 90 < th dose dependent rect. 7 22
32 94.23 radiation 10.0 90 < th dose dependent rect. 5 13
36 94.38 radiation 40.0 4320 < th dose dependent rect. 19 10
51 95.25 humidity 80.0 90 > th dose dependent rect. 5 18
52 95.28 humidity 80.0 90 > th dose dependent rect. 5 21
57 95.56 radiation 40.0 4320 < th dose dependent rect. 21 8
66 96.01 radiation 1.0 720 < th dose dependent rect. 6 18
68 96.10 radiation 1.0 720 > th dose independent rect. 7 12
81 96.25 radiation 1.0 720 < th dose independent rect. 7 17
94 96.66 humidity 50.0 90 > th dose dependent rect. 5 2
98 96.78 humidity 60.0 270 > th dose dependent rect. 11 20
100 96.96 wind 7.0 90 < th dose independent rect. 5 2
102 96.96 temperature 10.0 90 > th dose independent rect. 5 2
104 96.96 temperature 30.0 90 < th dose independent rect. 5 2
105 96.96 humidity 50.0 90 > th dose independent rect. 5 2
107 96.96 atmosphere 995.0 90 > th dose independent rect. 5 2
108 96.96 atmosphere 1015.0 90 < th dose independent rect. 5 2
109 96.96 radiation 30.0 90 < th dose independent rect. 5 2
111 96.96 temperature 10.0 90 > th dose independent rect. 7 22
113 96.98 radiation 40.0 90 < th dose dependent rect. 5 2
114 96.99 precipitation 0.1 90 < th dose independent rect. 5 2
125 96.99 precipitation 0.1 90 < th dose dependent rect. 5 2
129 97.08 wind 9.0 90 < th dose independent rect. 7 22
153 97.64 radiation 1.0 270 < th dose independent rect. 4 14
163 97.80 wind 9.0 90 < th dose dependent rect. 5 2
190 98.22 radiation 1.0 720 < th dose independent rect. 13 11
204 98.44 humidity 90.0 90 < th dose independent rect. 8 21
207 98.52 radiation 10.0 1440 < th dose independent rect. 19 10
215 98.61 temperature 10.0 90 > th dose dependent rect. 5 2
219 98.63 wind 1.0 90 > th dose independent rect. 5 2
224 98.69 atmosphere 995.0 90 > th dose independent rect. 7 22
228 98.75 radiation 10.0 90 < th dose independent rect. 5 12
230 98.80 atmosphere 995.0 90 > th dose dependent rect. 5 2
238 98.90 humidity 80.0 1440 < th dose independent rect. 7 7
280 99.32 temperature 30.0 90 < th dose dependent rect. 5 2
282 99.34 radiation 10.0 1440 < th dose independent rect. 21 8
283 99.37 humidity 50.0 720 > th dose dependent rect. 19 4
294 99.52 radiation 1.0 720 > th dose independent rect. 16 3
311 99.58 atmosphere 1015.0 90 < th dose independent rect. 7 22
317 99.66 humidity 50.0 90 > th dose dependent rect. 15 17
355 99.92 humidity 80.0 1440 > th dose independent rect. 7 8
357 99.92 humidity 80.0 270 > th dose dependent rect. 2 22
369 99.98 humidity 70.0 720 > th dose dependent rect. 4 20
401 100.11 precipitation 0.1 90 < th dose independent rect. 18 11
403 100.11 precipitation 0.1 90 < th dose dependent rect. 18 11
411 100.15 wind 5.0 30 < th dose independent rect. 18 11
422 100.23 humidity 80.0 720 > th dose independent rect. 4 18
447 100.39 atmosphere 1015.0 90 < th dose dependent rect. 5 2
457 100.47 humidity 80.0 30 > th dose independent rect. 5 21
463 100.50 humidity 70.0 90 > th dose dependent rect. 21 23
465 100.51 temperature 25.0 270 < th dose independent rect. 11 19
471 100.55 humidity 80.0 30 > th dose independent rect. 5 23
496 100.65 wind 9.0 1440 < th dose independent rect. 6 3
497 100.65 temperature 10.0 1440 > th dose independent rect. 6 3
500 100.65 humidity 50.0 1440 > th dose independent rect. 6 3
502 100.65 atmosphere 995.0 1440 > th dose independent rect. 6 3
503 100.65 atmosphere 1015.0 1440 < th dose independent rect. 6 3
505 100.65 temperature 10.0 1440 > th dose independent rect. 9 21
521 100.76 temperature 30.0 30 < th dose dependent rect. 5 13
567 100.94 radiation 1.0 90 > th dose independent rect. 4 3
610 101.02 humidity 80.0 270 > th dose independent rect. 11 20
614 101.03 temperature 30.0 30 < th dose dependent rect. 5 15
622 101.08 humidity 80.0 1440 < th dose independent sin 3 NA
626 101.08 temperature 25.0 720 > th dose dependent rect. 17 1
631 101.10 humidity 50.0 90 > th dose independent rect. 5 13
656 101.21 humidity 80.0 720 < th dose independent rect. 16 3
657 101.21 radiation 20.0 14400 < th dose independent rect. 19 11
673 101.29 temperature 25.0 90 > th dose independent rect. 8 21
714 101.48 temperature 30.0 1440 < th dose independent rect. 6 2
750 101.57 humidity 90.0 90 < th dose independent rect. 8 15
759 101.60 precipitation 0.1 270 < th dose independent rect. 16 11
761 101.60 precipitation 0.1 270 < th dose dependent rect. 16 11
763 101.61 radiation 20.0 14400 < th dose independent rect. 21 9
782 101.65 humidity 70.0 90 > th dose dependent rect. 5 6
791 101.67 temperature 25.0 720 > th dose dependent rect. 16 18
805 101.76 humidity 80.0 1440 > th dose independent sin 3 NA
826 101.84 radiation 1.0 720 > th dose independent rect. 16 20
831 101.85 humidity 70.0 720 > th dose independent rect. 19 12
846 101.90 wind 1.0 90 > th dose independent rect. 8 20
857 101.94 wind 1.0 90 > th dose independent rect. 7 22
858 101.94 humidity 90.0 720 < th dose dependent rect. 16 3
876 102.00 humidity 90.0 720 < th dose dependent rect. 17 1
888 102.04 radiation 10.0 90 < th dose dependent rect. 18 11
895 102.09 humidity 50.0 270 > th dose dependent rect. 19 12
896 102.09 humidity 70.0 720 > th dose dependent rect. 10 14
899 102.10 radiation 10.0 90 < th dose independent rect. 18 11
956 102.28 temperature 25.0 720 > th dose dependent rect. 16 3
969 102.32 temperature 10.0 90 > th dose independent rect. 18 11
970 102.32 humidity 50.0 90 > th dose independent rect. 18 11
974 102.32 temperature 10.0 90 > th dose independent rect. 5 13
975 102.32 atmosphere 1015.0 90 < th dose independent rect. 5 13
983 102.33 atmosphere 995.0 90 > th dose independent rect. 18 11