Os08g0485400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to 2-nitropropane dioxygenase-like protein.
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Os08g0485400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to 2-nitropropane dioxygenase-like protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 84.52 | 0.432 | 7.41 | 0.951 | 0.54 | -0.412 | 0.707 | -3.61 | 0.673 | 7.35 | 11.66 | 1060 | -- | -- |
| 88.33 | 0.438 | 7.28 | 1.65 | 0.379 | -0.597 | 1.1 | -- | 0.888 | 9.54 | 24.13 | 292 | -- | -- |
| 84.89 | 0.429 | 7.42 | 0.96 | 0.489 | -0.473 | -- | -3.94 | 0.672 | 7.09 | 11.09 | 880 | -- | -- |
| 91.59 | 0.446 | 7.33 | 1.69 | 0.337 | -0.746 | -- | -- | 0.838 | 9.8 | 25.6 | 312 | -- | -- |
| 93.8 | 0.451 | 7.41 | 1.11 | -- | -0.841 | -- | -3.91 | 0.751 | -- | 14.2 | 677 | -- | -- |
| 97.64 | 0.463 | 7.33 | 1.54 | 0.556 | -- | 1.18 | -- | 0.793 | 8.2 | -- | -- | -- | -- |
| 101.41 | 0.472 | 7.33 | 1.57 | 0.571 | -- | -- | -- | 0.79 | 7.58 | -- | -- | -- | -- |
| 95.81 | 0.456 | 7.34 | 1.74 | -- | -0.9 | -- | -- | 0.851 | -- | 25.29 | 544 | -- | -- |
| 164.24 | 0.597 | 7.37 | -- | 0.476 | -0.376 | -- | -- | 0.622 | 8.07 | 26.6 | 273 | -- | -- |
| 118.87 | 0.509 | 7.35 | 1.58 | -- | -- | -- | -- | 0.799 | -- | -- | -- | -- | -- |
| 166.71 | 0.604 | 7.37 | -- | 0.584 | -- | -- | -- | 0.615 | 7.4 | -- | -- | -- | -- |
| 172.87 | 0.612 | 7.39 | -- | -- | -0.65 | -- | -- | 0.633 | -- | 25.94 | 484 | -- | -- |
| 184.91 | 0.635 | 7.39 | -- | -- | -- | -- | -- | 0.623 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 81.83 | temperature | 10 | 720 | > th | dose dependent | rect. | 4 | 15 |
| 2 | 81.86 | temperature | 10 | 720 | > th | dose dependent | rect. | 7 | 8 |
| 5 | 82.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 5 | 13 |
| 6 | 82.02 | temperature | 30 | 720 | < th | dose dependent | sin | 1 | NA |
| 8 | 82.05 | temperature | 10 | 720 | > th | dose dependent | sin | 0 | NA |
| 38 | 82.44 | temperature | 30 | 720 | < th | dose dependent | rect. | 6 | 9 |
| 159 | 83.33 | temperature | 30 | 720 | < th | dose dependent | rect. | 9 | 4 |
| 241 | 83.85 | temperature | 10 | 1440 | > th | dose dependent | rect. | 10 | 2 |
| 419 | 84.56 | temperature | 30 | 1440 | < th | dose dependent | rect. | 10 | 1 |
| 502 | 84.65 | temperature | 10 | 720 | > th | dose dependent | rect. | 12 | 23 |
| 598 | 84.75 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 4 |
| 754 | 84.91 | temperature | 25 | 720 | > th | dose independent | rect. | 7 | 6 |
| 907 | 85.05 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 947 | 85.10 | temperature | 25 | 720 | < th | dose independent | rect. | 6 | 7 |
| 948 | 85.10 | temperature | 10 | 1440 | > th | dose dependent | no | NA | NA |
| 958 | 85.11 | temperature | 30 | 1440 | < th | dose dependent | rect. | 16 | 3 |
| 976 | 85.12 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 23 |
| 997 | 85.15 | temperature | 25 | 720 | > th | dose independent | rect. | 8 | 1 |