Os08g0485000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Phi-1 protein.
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Os08g0485000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Phi-1 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 350.94 | 0.88 | 8.39 | -3.54 | 0.138 | 1.62 | 4.12 | -4.03 | -0.424 | 0.561 | 40.82 | 266 | -- | -- |
| 364.39 | 0.889 | 8.38 | -3.71 | 0.0215 | 1.84 | -2.03 | -- | -0.412 | 10.7 | 79.41 | 236 | -- | -- |
| 388.94 | 0.926 | 8.42 | -3.73 | 0.854 | 0.742 | -- | 1.04 | -0.587 | 4.6 | 25.28 | 239 | -- | -- |
| 377.74 | 0.905 | 8.4 | -3.78 | 0.254 | 1.58 | -- | -- | -0.502 | 3.99 | 46.28 | 236 | -- | -- |
| 379.52 | 0.907 | 8.41 | -3.7 | -- | 1.53 | -- | 0.432 | -0.481 | -- | 31.25 | 236 | -- | -- |
| 396.67 | 0.934 | 8.43 | -3.76 | 1.27 | -- | 1.62 | -- | -0.58 | 2.24 | -- | -- | -- | -- |
| 405.72 | 0.943 | 8.43 | -3.8 | 1.29 | -- | -- | -- | -0.591 | 2.57 | -- | -- | -- | -- |
| 379.81 | 0.908 | 8.4 | -3.71 | -- | 1.72 | -- | -- | -0.464 | -- | 40.83 | 236 | -- | -- |
| 740.97 | 1.27 | 8.31 | -- | 0.0244 | 1.71 | -- | -- | -0.0356 | 15.8 | 34.67 | 251 | -- | -- |
| 503.02 | 1.05 | 8.42 | -3.75 | -- | -- | -- | -- | -0.559 | -- | -- | -- | -- | -- |
| 787.12 | 1.31 | 8.34 | -- | 1.21 | -- | -- | -- | -0.168 | 2.53 | -- | -- | -- | -- |
| 740.64 | 1.27 | 8.31 | -- | -- | 1.66 | -- | -- | -0.0582 | -- | 34.3 | 236 | -- | -- |
| 873.82 | 1.38 | 8.33 | -- | -- | -- | -- | -- | -0.143 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 345.31 | radiation | 10.0 | 270 | > th | dose independent | rect. | 9 | 7 |
| 2 | 345.76 | humidity | 80.0 | 14400 | > th | dose independent | rect. | 14 | 2 |
| 4 | 346.12 | radiation | 20.0 | 270 | > th | dose independent | rect. | 10 | 5 |
| 5 | 346.36 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 7 |
| 6 | 346.42 | humidity | 80.0 | 14400 | > th | dose dependent | rect. | 14 | 1 |
| 9 | 346.90 | radiation | 30.0 | 270 | > th | dose independent | rect. | 12 | 1 |
| 11 | 347.52 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 13 | 1 |
| 13 | 347.61 | radiation | 1.0 | 270 | > th | dose dependent | sin | 22 | NA |
| 14 | 347.63 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 15 | 23 |
| 16 | 347.73 | humidity | 80.0 | 14400 | < th | dose independent | rect. | 14 | 1 |
| 17 | 347.78 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 22 |
| 25 | 348.07 | temperature | 20.0 | 90 | > th | dose dependent | rect. | 18 | 15 |
| 27 | 348.15 | radiation | 20.0 | 270 | < th | dose independent | rect. | 16 | 23 |
| 29 | 348.31 | radiation | 20.0 | 270 | > th | dose dependent | rect. | 12 | 1 |
| 32 | 348.39 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 9 | 10 |
| 47 | 348.89 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 57 | 349.27 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 11 | 23 |
| 61 | 349.37 | temperature | 25.0 | 10 | > th | dose independent | rect. | 18 | 16 |
| 64 | 349.54 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 68 | 349.70 | radiation | 20.0 | 270 | > th | dose independent | rect. | 9 | 22 |
| 91 | 350.03 | radiation | 20.0 | 270 | < th | dose independent | rect. | 10 | 23 |
| 96 | 350.19 | radiation | 20.0 | 270 | < th | dose independent | rect. | 12 | 23 |
| 104 | 350.46 | radiation | 40.0 | 270 | < th | dose dependent | sin | 1 | NA |
| 117 | 350.66 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 13 | 1 |
| 118 | 350.66 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 13 | 1 |
| 123 | 350.70 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 15 |
| 128 | 350.86 | radiation | 30.0 | 270 | < th | dose independent | rect. | 3 | 18 |
| 131 | 350.89 | radiation | 20.0 | 270 | < th | dose independent | sin | 1 | NA |
| 148 | 350.98 | radiation | 20.0 | 270 | > th | dose independent | sin | 22 | NA |
| 149 | 350.98 | radiation | 40.0 | 270 | < th | dose dependent | no | NA | NA |
| 179 | 351.39 | radiation | 20.0 | 270 | < th | dose independent | rect. | 24 | 23 |
| 193 | 351.73 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 1 | 23 |
| 194 | 351.76 | radiation | 30.0 | 270 | < th | dose dependent | rect. | 4 | 10 |
| 203 | 351.84 | radiation | 20.0 | 270 | < th | dose independent | rect. | 4 | 10 |
| 207 | 351.94 | radiation | 20.0 | 270 | < th | dose independent | no | NA | NA |
| 221 | 352.07 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 18 | 22 |
| 236 | 352.11 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 4 | 15 |
| 237 | 352.13 | radiation | 1.0 | 90 | > th | dose dependent | sin | 17 | NA |
| 243 | 352.21 | radiation | 1.0 | 270 | > th | dose dependent | rect. | 4 | 12 |
| 338 | 352.79 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 7 | 18 |
| 364 | 353.00 | radiation | 1.0 | 270 | > th | dose dependent | no | NA | NA |
| 440 | 353.13 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 442 | 353.13 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 486 | 353.48 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 531 | 353.63 | radiation | 40.0 | 270 | > th | dose independent | rect. | 12 | 22 |
| 582 | 354.07 | humidity | 90.0 | 720 | > th | dose independent | rect. | 5 | 20 |
| 594 | 354.17 | radiation | 40.0 | 270 | < th | dose dependent | rect. | 3 | 18 |
| 618 | 354.31 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 18 | 3 |
| 619 | 354.31 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 18 | 3 |
| 661 | 354.55 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 18 | 3 |
| 693 | 354.70 | wind | 7.0 | 270 | < th | dose independent | rect. | 9 | 7 |
| 708 | 354.85 | radiation | 20.0 | 270 | > th | dose independent | rect. | 6 | 10 |
| 748 | 354.98 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 16 | 17 |
| 815 | 355.46 | humidity | 90.0 | 720 | > th | dose dependent | sin | 21 | NA |
| 820 | 355.48 | humidity | 70.0 | 270 | > th | dose dependent | rect. | 20 | 7 |
| 835 | 355.56 | radiation | 20.0 | 270 | < th | dose independent | rect. | 20 | 23 |
| 839 | 355.60 | wind | 9.0 | 14400 | < th | dose independent | rect. | 7 | 4 |
| 909 | 356.11 | humidity | 70.0 | 270 | < th | dose independent | rect. | 10 | 5 |
| 918 | 356.20 | humidity | 90.0 | 720 | > th | dose independent | rect. | 18 | 7 |
| 920 | 356.21 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 21 | 20 |
| 938 | 356.35 | humidity | 90.0 | 720 | > th | dose independent | rect. | 16 | 9 |
| 941 | 356.38 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 19 | 22 |
| 967 | 356.46 | precipitation | 0.1 | 270 | < th | dose independent | rect. | 16 | 17 |
| 968 | 356.46 | precipitation | 0.1 | 270 | < th | dose dependent | rect. | 16 | 17 |
| 972 | 356.50 | humidity | 90.0 | 720 | < th | dose independent | rect. | 8 | 17 |
| 974 | 356.52 | radiation | 20.0 | 270 | > th | dose independent | no | NA | NA |