BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0485000 Os08g0485000|AK073011
(153 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G64260.1 | chr5:25703980-25704897 FORWARD LENGTH=306 207 1e-54
AT1G35140.1 | chr1:12852089-12853018 FORWARD LENGTH=310 204 2e-53
AT4G08950.1 | chr4:5740378-5741322 FORWARD LENGTH=315 204 2e-53
AT5G09440.1 | chr5:2938397-2939233 FORWARD LENGTH=279 183 3e-47
AT3G02970.1 | chr3:669217-670495 REVERSE LENGTH=333 107 3e-24
AT5G51550.1 | chr5:20939793-20940806 REVERSE LENGTH=338 90 4e-19
AT2G35150.1 | chr2:14817220-14818191 REVERSE LENGTH=324 74 4e-14
AT2G17230.1 | chr2:7494892-7495983 REVERSE LENGTH=364 72 9e-14
>AT5G64260.1 | chr5:25703980-25704897 FORWARD LENGTH=306
Length = 305
Score = 207 bits (528), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 93/132 (70%), Positives = 111/132 (84%)
Query: 22 AYAWVGNAAEQCPGECAWPFHQPAYGPQAPPLVSPNADVGMDGIIINLATLLAGAVTNPY 81
AY WVGN+ QCPG CAWPFHQP YGPQ PPLV+PN DVG+DG+IINLATLLA VTNP+
Sbjct: 174 AYVWVGNSETQCPGYCAWPFHQPIYGPQTPPLVAPNGDVGVDGMIINLATLLANTVTNPF 233
Query: 82 GGGYFQGPTEAPLEAVTACTGMFGAGAYPGYPGQLPVDAATGASYNAVGVAGRRFLLPAM 141
GY+QGP APLEAV+AC G+FG+G+YPGY G++ VD TG+SYNA G+AGR++LLPAM
Sbjct: 234 NNGYYQGPPTAPLEAVSACPGIFGSGSYPGYAGRVLVDKTTGSSYNARGLAGRKYLLPAM 293
Query: 142 WDPKTSQCSTLV 153
WDP++S C TLV
Sbjct: 294 WDPQSSTCKTLV 305
>AT1G35140.1 | chr1:12852089-12853018 FORWARD LENGTH=310
Length = 309
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 89/133 (66%), Positives = 110/133 (82%)
Query: 20 RFAYAWVGNAAEQCPGECAWPFHQPAYGPQAPPLVSPNADVGMDGIIINLATLLAGAVTN 79
RFAY WVGN+ QCPG+CAWPFH P YGPQ+PPLV+PN DVG+DG++INLA+L+A TN
Sbjct: 176 RFAYIWVGNSETQCPGQCAWPFHAPVYGPQSPPLVAPNNDVGLDGMVINLASLMAATATN 235
Query: 80 PYGGGYFQGPTEAPLEAVTACTGMFGAGAYPGYPGQLPVDAATGASYNAVGVAGRRFLLP 139
P+G GY+QGP APLEA +ACTG++G G+YPGY G+L VDA TG SYN G+ GR++LLP
Sbjct: 236 PFGDGYYQGPKTAPLEAGSACTGVYGKGSYPGYAGELLVDATTGGSYNVKGLNGRKYLLP 295
Query: 140 AMWDPKTSQCSTL 152
A++DPKT CSTL
Sbjct: 296 ALFDPKTDSCSTL 308
>AT4G08950.1 | chr4:5740378-5741322 FORWARD LENGTH=315
Length = 314
Score = 204 bits (519), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 90/134 (67%), Positives = 109/134 (81%)
Query: 20 RFAYAWVGNAAEQCPGECAWPFHQPAYGPQAPPLVSPNADVGMDGIIINLATLLAGAVTN 79
+FAY WVGN+ QCPG+CAWPFH P YGPQ+PPLV+PN DVG+DG++INLA+LLAG TN
Sbjct: 181 KFAYIWVGNSETQCPGQCAWPFHAPVYGPQSPPLVAPNNDVGLDGMVINLASLLAGTATN 240
Query: 80 PYGGGYFQGPTEAPLEAVTACTGMFGAGAYPGYPGQLPVDAATGASYNAVGVAGRRFLLP 139
P+G GY+QGP APLEA +AC G++G GAYPGY G L VD TG S+NA G GR+FLLP
Sbjct: 241 PFGNGYYQGPQNAPLEAASACPGVYGKGAYPGYAGDLLVDTTTGGSFNAYGANGRKFLLP 300
Query: 140 AMWDPKTSQCSTLV 153
A++DP TS CST+V
Sbjct: 301 ALYDPTTSACSTMV 314
>AT5G09440.1 | chr5:2938397-2939233 FORWARD LENGTH=279
Length = 278
Score = 183 bits (464), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 85/132 (64%), Positives = 105/132 (79%), Gaps = 12/132 (9%)
Query: 22 AYAWVGNAAEQCPGECAWPFHQPAYGPQAPPLVSPNADVGMDGIIINLATLLAGAVTNPY 81
AY WVGN+ QCPG CAWPFHQP YGPQ+PPLV+PN DVG+DG+IIN+ATLL VTNP
Sbjct: 159 AYVWVGNSETQCPGYCAWPFHQPIYGPQSPPLVAPNGDVGVDGMIINIATLLVNTVTNP- 217
Query: 82 GGGYFQGPTEAPLEAVTACTGMFGAGAYPGYPGQLPVDAATGASYNAVGVAGRRFLLPAM 141
+P EAV+ACTG+FG+GAYPGY G++ VD +GASYNA+G+AGR++LLPA+
Sbjct: 218 ----------SP-EAVSACTGIFGSGAYPGYAGRVLVDKTSGASYNALGLAGRKYLLPAL 266
Query: 142 WDPKTSQCSTLV 153
WDP+TS C T+V
Sbjct: 267 WDPQTSTCKTMV 278
>AT3G02970.1 | chr3:669217-670495 REVERSE LENGTH=333
Length = 332
Score = 107 bits (266), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 55/145 (37%), Positives = 78/145 (53%), Gaps = 16/145 (11%)
Query: 23 YAWVGNAAEQCPGECAWPFHQPAYGPQAPPLVSPNADVGMDGIIINLATLLAGAVTNP-- 80
Y V N +CPGECAWPFH GP+ + +VG D ++I LAT LA TNP
Sbjct: 186 YIMVSNPEVECPGECAWPFHTADKGPRGMTYQPASGEVGADALVIQLATGLADLATNPDL 245
Query: 81 -----------YGGGYFQGPTEAPLEAV---TACTGMFGAGAYPGYPGQLPVDAATGASY 126
Y + + + V T CT +FG+GA+PG+ G++ VD TG ++
Sbjct: 246 TKSLFKSETTPYNDDVKKNHESSSMYIVDPATKCTRVFGSGAFPGFTGRIRVDPITGGAF 305
Query: 127 NAVGVAGRRFLLPAMWDPKTSQCST 151
N+ G+ +FL+P++WDPKT C T
Sbjct: 306 NSHGINHLKFLIPSIWDPKTKSCWT 330
>AT5G51550.1 | chr5:20939793-20940806 REVERSE LENGTH=338
Length = 337
Score = 90.1 bits (222), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/129 (42%), Positives = 79/129 (61%), Gaps = 3/129 (2%)
Query: 23 YAWVGNAAEQCPGECAWPFHQPAYGPQAPPLVSPNADVGMDGIIINLATLLAGAVTNPYG 82
YAWVGN+A+ CPG CA+PF PA+ P P+ SPN DVG+DG+I +A +A TNP
Sbjct: 205 YAWVGNSAKLCPGVCAYPFAVPAFIPGLKPVKSPNGDVGVDGMISVIAHEIAELATNPLV 264
Query: 83 GGYFQGPT-EAPLEAVTACTGMFGAGAYPGYPGQLPVDAATGASYNAVGVAGRRFLLPAM 141
++ GP AP+E C G++G G Y GQ+ ++ +GA+YN G+ RR+L+ +
Sbjct: 265 NAWYAGPDPVAPVEIADLCEGIYGTGGGGSYTGQM-LNDHSGATYNVNGIR-RRYLIQWL 322
Query: 142 WDPKTSQCS 150
W S C+
Sbjct: 323 WSHVVSYCT 331
>AT2G35150.1 | chr2:14817220-14818191 REVERSE LENGTH=324
Length = 323
Score = 73.6 bits (179), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 7/133 (5%)
Query: 23 YAWVGNAAEQCPGECAWPFHQPAYGPQA-----PPLVSPNADVGMDGIIINLATLLAGAV 77
YAWVGN+ QCP CA+PF QP P + + PN +VG+DG+I +A LA
Sbjct: 185 YAWVGNSERQCPEMCAYPFAQPKPFPGSGFVAREKMKPPNGEVGIDGMISVIAHELAEVS 244
Query: 78 TNPYGGGYFQGPT-EAPLEAVTACTGMFGAGAYPGYPGQLPVDAATGASYNAVGVAGRRF 136
+NP G++ G AP E C G++G+G GY G + D YN GV GR++
Sbjct: 245 SNPMLNGWYGGEDATAPTEIADLCLGVYGSGGGGGYMGSVYKDRWRNV-YNVKGVKGRKY 303
Query: 137 LLPAMWDPKTSQC 149
L+ +WD ++C
Sbjct: 304 LIQWVWDLNRNRC 316
>AT2G17230.1 | chr2:7494892-7495983 REVERSE LENGTH=364
Length = 363
Score = 72.4 bits (176), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 4/131 (3%)
Query: 23 YAWVGNAAEQCPGECAWPFHQPAYGPQAPP--LVSPNADVGMDGIIINLATLLAGAVTNP 80
YAWVG + +QCP CA+PF P Y P L PN + G+DG++ + LA V+NP
Sbjct: 228 YAWVGQSGKQCPEVCAYPFALPGYMGHGGPGELRPPNGETGVDGMVSVIGHELAEVVSNP 287
Query: 81 YGGGYFQGPT-EAPLEAVTACTGMFGAGAYPGYPGQLPVDAATGASYNAVGVAGRRFLLP 139
++ G AP E C G++G+G GY GQ+ D G ++N G GR+FL+
Sbjct: 288 LINAWYAGEDPTAPTEIGDLCEGLYGSGGGGGYIGQVMRDRE-GKTFNMNGKGGRKFLVQ 346
Query: 140 AMWDPKTSQCS 150
+W+P CS
Sbjct: 347 WIWNPNLKACS 357
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.319 0.138 0.455
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 3,437,190
Number of extensions: 143691
Number of successful extensions: 292
Number of sequences better than 1.0e-05: 8
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 8
Length of query: 153
Length of database: 11,106,569
Length adjustment: 90
Effective length of query: 63
Effective length of database: 8,639,129
Effective search space: 544265127
Effective search space used: 544265127
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 107 (45.8 bits)