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Os08g0484700

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Homeodomain-like containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 13.7 (0.0169) R2 : 0.00359
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0455 (0.0355) R2dN8 : 0.00464 R2N8 : 0.00359
σ : 0.317
deviance : 46.22
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
33.75 0.273 13.7 0.226 0.381 0.432 0.288 0.521 -0.0705 5.64 20.02 248 -- --
34.28 0.273 13.7 0.189 0.389 0.38 0.116 -- -0.0855 5.85 20.49 346 -- --
33.94 0.271 13.7 0.224 0.379 0.428 -- 0.471 -0.0718 5.59 20.1 244 -- --
34.22 0.272 13.7 0.18 0.363 0.362 -- -- -0.0925 5.87 20.5 346 -- --
40.91 0.3 13.7 0.217 -- 0.27 -- 0.0127 -0.0619 -- 20.1 244 -- --
38.6 0.291 13.7 0.273 0.325 -- 0.0599 -- -0.0212 6.05 -- -- -- --
38.61 0.291 13.7 0.274 0.326 -- -- -- -0.0214 6.04 -- -- -- --
40.91 0.299 13.7 0.215 -- 0.269 -- -- -0.0624 -- 20.1 244 -- --
34.85 0.275 13.7 -- 0.358 0.389 -- -- -0.101 5.81 20.4 349 -- --
44.11 0.31 13.7 0.283 -- -- -- -- -0.0141 -- -- -- -- --
40.59 0.298 13.7 -- 0.33 -- -- -- -0.0519 6 -- -- -- --
42.08 0.303 13.7 -- -- 0.301 -- -- -0.091 -- 20.1 244 -- --
46.22 0.317 13.7 -- -- -- -- -- -0.0455 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 31.90 temperature 20 270 > th dose independent rect. 19 13
5 32.11 temperature 20 10 > th dose independent rect. 21 12
15 32.50 temperature 20 270 > th dose independent rect. 2 22
21 32.67 temperature 20 10 > th dose independent sin 7 NA
22 32.68 temperature 20 270 < th dose independent rect. 22 6
27 32.75 temperature 20 10 < th dose independent sin 7 NA
37 32.85 humidity 80 1440 < th dose independent rect. 21 19
45 32.92 temperature 20 720 > th dose independent rect. 20 5
47 32.94 temperature 20 10 > th dose independent rect. 18 15
49 32.94 humidity 80 1440 > th dose independent rect. 23 18
54 32.97 temperature 20 270 > th dose independent sin 10 NA
58 33.00 temperature 20 90 > th dose independent sin 8 NA
78 33.10 temperature 20 270 < th dose independent sin 10 NA
80 33.11 temperature 20 90 < th dose independent sin 8 NA
95 33.19 temperature 20 10 < th dose independent rect. 24 6
103 33.20 temperature 20 270 < th dose independent rect. 21 12
116 33.23 temperature 20 10 < th dose independent rect. 24 8
129 33.26 temperature 20 270 > th dose independent rect. 10 23
140 33.30 temperature 20 10 > th dose independent rect. 15 18
228 33.51 temperature 20 270 < th dose independent rect. 8 21
229 33.51 temperature 20 10 > th dose dependent rect. 22 11
286 33.61 humidity 70 270 > th dose dependent rect. 14 18
290 33.62 temperature 20 10 < th dose independent rect. 20 12
349 33.68 humidity 80 720 < th dose independent rect. 8 23
355 33.69 temperature 20 10 < th dose independent rect. 20 16
376 33.71 humidity 80 720 > th dose independent rect. 12 22
387 33.72 humidity 80 270 > th dose dependent rect. 2 22
397 33.73 temperature 25 10 < th dose dependent sin 6 NA
416 33.75 temperature 20 90 < th dose independent rect. 1 4
422 33.76 humidity 80 1440 > th dose independent sin 4 NA
442 33.77 humidity 80 1440 < th dose independent sin 4 NA
453 33.78 temperature 20 270 > th dose independent no NA NA
468 33.80 temperature 20 270 < th dose independent no NA NA
476 33.80 temperature 20 270 < th dose independent rect. 10 23
480 33.80 humidity 80 720 < th dose independent rect. 14 23
493 33.81 temperature 15 270 > th dose dependent rect. 21 11
514 33.82 temperature 20 10 > th dose independent rect. 21 23
527 33.83 humidity 80 720 < th dose independent rect. 11 23
531 33.84 humidity 80 720 < th dose independent no NA NA
556 33.85 temperature 20 90 > th dose independent rect. 21 23
564 33.86 humidity 80 720 < th dose independent rect. 5 23
619 33.90 humidity 80 720 < th dose independent rect. 16 23
633 33.91 humidity 80 720 > th dose independent rect. 4 20
659 33.92 humidity 80 720 > th dose independent rect. 1 23
679 33.93 humidity 70 720 > th dose dependent rect. 20 21
683 33.94 humidity 80 1440 < th dose independent rect. 8 9
689 33.94 humidity 80 720 > th dose independent rect. 4 23
691 33.94 humidity 80 720 < th dose independent rect. 1 23
710 33.96 humidity 80 720 > th dose independent no NA NA
714 33.96 humidity 80 1440 > th dose independent rect. 8 9
729 33.96 humidity 70 1440 > th dose dependent rect. 1 16
842 34.03 temperature 20 90 < th dose dependent rect. 1 4
857 34.04 humidity 70 1440 > th dose dependent rect. 9 7
925 34.08 temperature 20 30 < th dose dependent rect. 24 8
943 34.09 radiation 10 720 < th dose dependent rect. 13 18
963 34.11 temperature 20 270 < th dose independent rect. 1 1
986 34.12 humidity 70 1440 > th dose independent rect. 10 6
994 34.12 temperature 25 10 < th dose dependent rect. 24 14
998 34.13 temperature 20 720 < th dose independent sin 16 NA