BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0484700 Os08g0484700|J065041E01
(315 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373 83 2e-16
AT3G24860.1 | chr3:9073642-9074574 FORWARD LENGTH=311 73 2e-13
AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297 67 1e-11
AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543 67 1e-11
AT3G14180.1 | chr3:4707290-4708621 REVERSE LENGTH=444 55 6e-08
AT3G58630.1 | chr3:21683928-21685771 REVERSE LENGTH=322 52 6e-07
>AT2G44730.1 | chr2:18437447-18438565 REVERSE LENGTH=373
Length = 372
Score = 82.8 bits (203), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 57/102 (55%), Gaps = 9/102 (8%)
Query: 25 PGQPWAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVXXXXXXXXXXXXXXLRKTGTQCR 84
P W+ ET+ L+DAY ++W L RG LKA WEEV L+KT QCR
Sbjct: 60 PPPCWSLEETIALIDAYRDKWYALNRGNLKANHWEEV--AEAVGANCPDVILKKTAVQCR 117
Query: 85 HKLEKLRKRYRIEGAR----PVT---SLWPYFRRMERLERGP 119
HK+EKLRKRYR E R PV S W +F+RME +E P
Sbjct: 118 HKMEKLRKRYRTEIQRARSVPVARFISSWVHFKRMEAMENRP 159
>AT3G24860.1 | chr3:9073642-9074574 FORWARD LENGTH=311
Length = 310
Score = 73.2 bits (178), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 55/90 (61%), Gaps = 8/90 (8%)
Query: 29 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVXXXXXXXXXXXXXXLRKTGTQCRHKLE 88
W ET+ L+++Y+E+W + RG LK+ WEE+ + +T TQCRHK+E
Sbjct: 65 WTQDETLLLIESYKEKWFAIGRGPLKSTHWEEI-----AVAASSRSGVERTSTQCRHKIE 119
Query: 89 KLRKRYRIE--GARPVTSLWPYFRRMERLE 116
K+RKR+R E P+ S+WP++ +ME L+
Sbjct: 120 KMRKRFRSERQSMGPI-SIWPFYNQMEELD 148
>AT3G54390.1 | chr3:20137912-20138863 REVERSE LENGTH=297
Length = 296
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 29 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVXXXXXXXXXXXXXXLRKTGTQCRHKLE 88
W+ LL+AYE +W R +LK Q WE+V KT TQC++K+E
Sbjct: 38 WSEGAVSTLLEAYESKWVLRNRAKLKGQDWEDVAKHVSSRATHTKSP--KTQTQCKNKIE 95
Query: 89 KLRKRYRIEGARPVTSLWPYFRRMERLERG 118
++KRYR E A S WP + R++ L RG
Sbjct: 96 SMKKRYRSESATADGSSWPLYPRLDHLLRG 125
>AT3G10030.1 | chr3:3092277-3094831 REVERSE LENGTH=543
Length = 542
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 29 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVXXXXXXXXXXXXXXLRKTGTQCRHKLE 88
W+ LLDAY +++T+L RG L+ + WEEV L K+ QC++K++
Sbjct: 161 WSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEV----ASSVSERCEKLSKSVEQCKNKID 216
Query: 89 KLRKRYRIE-----GARPVTSLWPYFRRMERL 115
L+KRY++E S WP+F++ME +
Sbjct: 217 NLKKRYKLERHRMSSGGTAASHWPWFKKMEDI 248
>AT3G14180.1 | chr3:4707290-4708621 REVERSE LENGTH=444
Length = 443
Score = 54.7 bits (130), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 48/91 (52%), Gaps = 6/91 (6%)
Query: 29 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVXXXXXXXXXXXXXXLRKTGTQCRHKLE 88
W+ T L+DA+ ER+ L RG LK + W+EV + KT QC+++++
Sbjct: 84 WSEAATAVLIDAWGERYLELSRGNLKQKHWKEV--AEIVSSREDYGKIPKTDIQCKNRID 141
Query: 89 KLRKRYRIEGARPVT----SLWPYFRRMERL 115
++K+Y+ E R S W +F +++RL
Sbjct: 142 TVKKKYKQEKVRIANGGGRSRWVFFDKLDRL 172
>AT3G58630.1 | chr3:21683928-21685771 REVERSE LENGTH=322
Length = 321
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 14/103 (13%)
Query: 29 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVXXXXXXXXXXXXXXLR-------KTGT 81
W+ T L+ A+ R+ L RG L+ + W+EV + +T
Sbjct: 26 WSEEATFTLIQAWGNRYVDLSRGNLRQKHWQEVANAVNDRHYNTGRNVSAAKSQPYRTDV 85
Query: 82 QCRHKLEKLRKRYRIEGAR-------PVTSLWPYFRRMERLER 117
QC+++++ L+K+Y++E AR S WP+F ++ L R
Sbjct: 86 QCKNRIDTLKKKYKVEKARVSESNPGAYISPWPFFSALDDLLR 128
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.134 0.417
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 4,881,020
Number of extensions: 154320
Number of successful extensions: 330
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 322
Number of HSP's successfully gapped: 9
Length of query: 315
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 217
Effective length of database: 8,419,801
Effective search space: 1827096817
Effective search space used: 1827096817
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 112 (47.8 bits)