BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0484700 Os08g0484700|J065041E01
         (315 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0484700  Homeodomain-like containing protein                 402   e-112

>Os08g0484700 Homeodomain-like containing protein
          Length = 315

 Score =  402 bits (1034), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 214/300 (71%), Positives = 214/300 (71%)

Query: 16  LPQRRRKSAPGQPWAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVXXXXXXXXXXXXXX 75
           LPQRRRKSAPGQPWAHMETMHLLDAYEERWTRLRRGQLKAQQWEEV              
Sbjct: 16  LPQRRRKSAPGQPWAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVAARCAASGAA 75

Query: 76  LRKTGTQCRHKLEKLRKRYRIEGARPVTSLWPYFRRMERLERGPLXXXXXXXXXXXXXXX 135
           LRKTGTQCRHKLEKLRKRYRIEGARPVTSLWPYFRRMERLERGPL               
Sbjct: 76  LRKTGTQCRHKLEKLRKRYRIEGARPVTSLWPYFRRMERLERGPLPVSSAFPPPPPAASP 135

Query: 136 XXXXXXXXXXXXXXXXXXXXXXXXIPRNNTRSINGILRDXXXXXXXXXXXAXXXXXXXXX 195
                                   IPRNNTRSINGILRD           A         
Sbjct: 136 PAAASDDDDDDEEDDEEEEEVEEPIPRNNTRSINGILRDSGGGGGGFSGFAPRPPPQQPP 195

Query: 196 XSFAMLSTAPPRKRVPYEAFQAKVAMADKVKEEEPPPVATRPGGGTNEQLSAVLRDFGQG 255
            SFAMLSTAPPRKRVPYEAFQAKVAMADKVKEEEPPPVATRPGGGTNEQLSAVLRDFGQG
Sbjct: 196 PSFAMLSTAPPRKRVPYEAFQAKVAMADKVKEEEPPPVATRPGGGTNEQLSAVLRDFGQG 255

Query: 256 IMRLERRRMEMQWEIDRGWKETEARHNRMLLDAQRHLHEXXXXXXXXXXXXRREHGGDGS 315
           IMRLERRRMEMQWEIDRGWKETEARHNRMLLDAQRHLHE            RREHGGDGS
Sbjct: 256 IMRLERRRMEMQWEIDRGWKETEARHNRMLLDAQRHLHEALAATPPPLKKARREHGGDGS 315



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.320    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 8,642,586
Number of extensions: 301506
Number of successful extensions: 859
Number of sequences better than 1.0e-10: 2
Number of HSP's gapped: 866
Number of HSP's successfully gapped: 3
Length of query: 315
Length of database: 17,035,801
Length adjustment: 101
Effective length of query: 214
Effective length of database: 11,762,187
Effective search space: 2517108018
Effective search space used: 2517108018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)