Os08g0478200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to ATP synthase D chain, mitochondrial (EC 3.6.3.14).
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Os08g0478200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to ATP synthase D chain, mitochondrial (EC 3.6.3.14).
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 29.07 | 0.253 | 14 | -2.06 | 0.188 | 0.743 | 0.0178 | -2.3 | -0.4 | 21.8 | 17.5 | 2333 | -- | -- |
| 31.84 | 0.263 | 14 | -1.73 | 0.26 | 0.903 | -0.179 | -- | -0.38 | 21.9 | 12.62 | 10847 | -- | -- |
| 29 | 0.251 | 14 | -2.06 | 0.19 | 0.77 | -- | -2.37 | -0.401 | 22.7 | 17.53 | 2050 | -- | -- |
| 31.88 | 0.263 | 14 | -1.71 | 0.245 | 0.903 | -- | -- | -0.363 | 21.9 | 11.97 | 10798 | -- | -- |
| 31.03 | 0.259 | 14 | -2.11 | -- | 0.794 | -- | -2.43 | -0.42 | -- | 17.5 | 2254 | -- | -- |
| 45.04 | 0.315 | 13.9 | -1.17 | 0.272 | -- | -0.136 | -- | -0.0792 | 22.3 | -- | -- | -- | -- |
| 45.12 | 0.315 | 13.9 | -1.16 | 0.273 | -- | -- | -- | -0.0788 | 22.3 | -- | -- | -- | -- |
| 35.49 | 0.277 | 14 | -1.72 | -- | 0.934 | -- | -- | -0.376 | -- | 11.4 | 10871 | -- | -- |
| 64.33 | 0.374 | 13.8 | -- | 0.282 | -0.611 | -- | -- | 0.261 | 22.3 | 18.2 | 47520 | -- | -- |
| 49.64 | 0.329 | 13.9 | -1.16 | -- | -- | -- | -- | -0.0781 | -- | -- | -- | -- | -- |
| 80.72 | 0.42 | 13.9 | -- | 0.267 | -- | -- | -- | 0.0506 | 22 | -- | -- | -- | -- |
| 69.18 | 0.387 | 13.8 | -- | -- | -0.6 | -- | -- | 0.257 | -- | 18.1 | 47520 | -- | -- |
| 85.02 | 0.43 | 13.9 | -- | -- | -- | -- | -- | 0.0504 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 25.88 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 12 |
| 3 | 26.17 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 12 |
| 4 | 26.32 | humidity | 90 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 7 | 26.46 | humidity | 90 | 14400 | > th | dose dependent | rect. | 21 | 4 |
| 10 | 26.54 | radiation | 1 | 14400 | > th | dose independent | rect. | 18 | 1 |
| 24 | 26.72 | humidity | 90 | 14400 | > th | dose independent | rect. | 18 | 9 |
| 43 | 27.01 | humidity | 90 | 14400 | < th | dose independent | rect. | 18 | 7 |
| 44 | 27.01 | humidity | 90 | 14400 | > th | dose dependent | sin | 14 | NA |
| 56 | 27.09 | humidity | 90 | 14400 | > th | dose independent | rect. | 21 | 3 |
| 70 | 27.18 | humidity | 80 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 76 | 27.23 | humidity | 90 | 14400 | > th | dose independent | sin | 14 | NA |
| 80 | 27.25 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 8 |
| 82 | 27.26 | radiation | 1 | 14400 | < th | dose independent | rect. | 18 | 1 |
| 97 | 27.31 | humidity | 90 | 14400 | < th | dose independent | rect. | 21 | 2 |
| 109 | 27.38 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 5 |
| 125 | 27.45 | humidity | 90 | 14400 | > th | dose dependent | rect. | 15 | 17 |
| 144 | 27.52 | humidity | 80 | 14400 | < th | dose independent | rect. | 14 | 5 |
| 158 | 27.57 | humidity | 80 | 14400 | < th | dose independent | rect. | 16 | 2 |
| 179 | 27.62 | humidity | 80 | 14400 | > th | dose dependent | rect. | 18 | 1 |
| 240 | 27.79 | humidity | 90 | 14400 | < th | dose independent | sin | 15 | NA |
| 264 | 27.83 | radiation | 1 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 277 | 27.86 | radiation | 1 | 14400 | < th | dose independent | rect. | 5 | 1 |
| 374 | 28.06 | humidity | 90 | 14400 | < th | dose independent | rect. | 17 | 15 |
| 381 | 28.07 | humidity | 90 | 14400 | > th | dose dependent | rect. | 6 | 23 |
| 384 | 28.08 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 6 |
| 411 | 28.13 | humidity | 90 | 14400 | > th | dose dependent | no | NA | NA |
| 416 | 28.14 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 8 |
| 417 | 28.14 | humidity | 90 | 14400 | > th | dose dependent | rect. | 3 | 23 |
| 481 | 28.23 | wind | 3 | 43200 | < th | dose independent | rect. | 6 | 8 |
| 485 | 28.23 | wind | 1 | 43200 | > th | dose dependent | rect. | 5 | 11 |
| 495 | 28.26 | wind | 3 | 43200 | > th | dose independent | rect. | 6 | 8 |
| 508 | 28.29 | radiation | 1 | 14400 | < th | dose independent | rect. | 24 | 6 |
| 510 | 28.29 | wind | 3 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 514 | 28.29 | humidity | 90 | 14400 | > th | dose dependent | rect. | 24 | 23 |
| 519 | 28.30 | radiation | 1 | 14400 | < th | dose independent | rect. | 20 | 10 |
| 540 | 28.32 | wind | 7 | 43200 | < th | dose dependent | rect. | 4 | 12 |
| 557 | 28.34 | humidity | 80 | 43200 | > th | dose independent | rect. | 24 | 1 |
| 579 | 28.37 | wind | 3 | 43200 | < th | dose independent | rect. | 3 | 12 |
| 602 | 28.41 | humidity | 80 | 43200 | < th | dose independent | rect. | 23 | 9 |
| 614 | 28.42 | wind | 5 | 43200 | < th | dose dependent | rect. | 6 | 8 |
| 622 | 28.43 | wind | 1 | 43200 | > th | dose dependent | sin | 2 | NA |
| 648 | 28.46 | humidity | 80 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 692 | 28.50 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 16 |
| 730 | 28.54 | wind | 9 | 43200 | < th | dose dependent | sin | 2 | NA |
| 745 | 28.56 | humidity | 80 | 43200 | > th | dose independent | rect. | 23 | 8 |
| 780 | 28.58 | wind | 9 | 43200 | < th | dose dependent | rect. | 24 | 16 |
| 781 | 28.59 | humidity | 80 | 43200 | < th | dose independent | rect. | 3 | 5 |
| 795 | 28.60 | wind | 3 | 43200 | > th | dose dependent | rect. | 6 | 1 |
| 796 | 28.60 | temperature | 20 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 807 | 28.62 | wind | 3 | 43200 | > th | dose independent | sin | 3 | NA |
| 849 | 28.65 | temperature | 20 | 4320 | > th | dose dependent | rect. | 13 | 3 |
| 875 | 28.67 | temperature | 20 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 910 | 28.70 | temperature | 20 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 911 | 28.70 | wind | 3 | 43200 | < th | dose dependent | rect. | 7 | 5 |
| 917 | 28.71 | humidity | 80 | 14400 | > th | dose independent | rect. | 14 | 1 |
| 924 | 28.72 | wind | 3 | 43200 | < th | dose independent | sin | 3 | NA |
| 933 | 28.73 | humidity | 90 | 14400 | > th | dose independent | no | NA | NA |
| 980 | 28.77 | atmosphere | 995 | 43200 | < th | dose independent | rect. | 13 | 2 |