BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0478200 Os08g0478200|AK068050
         (169 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0478200  Similar to ATP synthase D chain, mitochondrial...   272   7e-74

>Os08g0478200 Similar to ATP synthase D chain, mitochondrial (EC 3.6.3.14)
          Length = 169

 Score =  272 bits (696), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 132/150 (88%), Positives = 132/150 (88%)

Query: 20  IDWEGMAKMLVSDEARKEFNTLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDM 79
           IDWEGMAKMLVSDEARKEFNTLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDM
Sbjct: 20  IDWEGMAKMLVSDEARKEFNTLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDM 79

Query: 80  YKEAYESIEIPKYVDTVTPQYKPKFDXXXXXXXXXXXXXXXXXXRIEKELAELQEMKKNI 139
           YKEAYESIEIPKYVDTVTPQYKPKFD                  RIEKELAELQEMKKNI
Sbjct: 80  YKEAYESIEIPKYVDTVTPQYKPKFDALLVELKEAEKESLKESERIEKELAELQEMKKNI 139

Query: 140 STMTADEYFAKHPEVKQKFDDEIRNDNWGY 169
           STMTADEYFAKHPEVKQKFDDEIRNDNWGY
Sbjct: 140 STMTADEYFAKHPEVKQKFDDEIRNDNWGY 169



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.314    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,270,065
Number of extensions: 144036
Number of successful extensions: 354
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 75
Effective length of database: 12,127,685
Effective search space: 909576375
Effective search space used: 909576375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 152 (63.2 bits)