BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0478200 Os08g0478200|AK068050
         (169 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G52300.1  | chr3:19396689-19398119 FORWARD LENGTH=169          223   4e-59

>AT3G52300.1 | chr3:19396689-19398119 FORWARD LENGTH=169
          Length = 168

 Score =  223 bits (567), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 123/150 (82%)

Query: 20  IDWEGMAKMLVSDEARKEFNTLRRTFEDVNHQLQTKFSQEPQPIDWEYYRKGIGSKVVDM 79
           IDW+GMAK+LV+DEAR+EF+ LRR F++VN QLQTKFSQEP+PIDW+YYRKGIG+ +VD 
Sbjct: 19  IDWDGMAKVLVTDEARREFSNLRRAFDEVNTQLQTKFSQEPEPIDWDYYRKGIGAGIVDK 78

Query: 80  YKEAYESIEIPKYVDTVTPQYKPKFDXXXXXXXXXXXXXXXXXXRIEKELAELQEMKKNI 139
           YKEAY+SIEIPKYVD VTP+YKPKFD                  R+EKE+A++QE+ K +
Sbjct: 79  YKEAYDSIEIPKYVDKVTPEYKPKFDALLVELKEAEQKSLKESERLEKEIADVQEISKKL 138

Query: 140 STMTADEYFAKHPEVKQKFDDEIRNDNWGY 169
           STMTADEYF KHPE+K+KFDDEIRNDNWGY
Sbjct: 139 STMTADEYFEKHPELKKKFDDEIRNDNWGY 168



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.314    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,969,525
Number of extensions: 106342
Number of successful extensions: 280
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 279
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 11,106,569
Length adjustment: 91
Effective length of query: 78
Effective length of database: 8,611,713
Effective search space: 671713614
Effective search space used: 671713614
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 108 (46.2 bits)