Os08g0471900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, ZPR1-type domain containing protein.
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Os08g0471900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, ZPR1-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.73 | 0.375 | 8.8 | -1.55 | 0.874 | -1.32 | -1.07 | -0.759 | -0.303 | 8.04 | 22.1 | 1485 | -- | -- |
| 65.33 | 0.376 | 8.81 | -1.75 | 0.845 | -1.29 | -0.955 | -- | -0.317 | 8.1 | 22.2 | 1518 | -- | -- |
| 67.11 | 0.382 | 8.8 | -1.59 | 0.874 | -1.32 | -- | -0.75 | -0.306 | 8.07 | 22.1 | 1509 | -- | -- |
| 68.44 | 0.385 | 8.82 | -1.82 | 0.878 | -1.3 | -- | -- | -0.357 | 8.08 | 22.2 | 1509 | -- | -- |
| 108.93 | 0.486 | 8.82 | -1.55 | -- | -1.33 | -- | -0.831 | -0.289 | -- | 22.16 | 1509 | -- | -- |
| 127.09 | 0.528 | 8.73 | -1.32 | 0.893 | -- | -1.05 | -- | 0.0687 | 7.85 | -- | -- | -- | -- |
| 130.27 | 0.534 | 8.72 | -1.34 | 0.892 | -- | -- | -- | 0.0702 | 7.91 | -- | -- | -- | -- |
| 110.56 | 0.49 | 8.84 | -1.82 | -- | -1.31 | -- | -- | -0.351 | -- | 22.2 | 1509 | -- | -- |
| 146.44 | 0.564 | 8.76 | -- | 0.906 | -0.877 | -- | -- | -0.0684 | 7.95 | 22.4 | 1420 | -- | -- |
| 173.57 | 0.616 | 8.75 | -1.33 | -- | -- | -- | -- | 0.082 | -- | -- | -- | -- | -- |
| 177.83 | 0.624 | 8.69 | -- | 0.883 | -- | -- | -- | 0.22 | 8.02 | -- | -- | -- | -- |
| 187.44 | 0.64 | 8.75 | -- | -- | -0.698 | -- | -- | 0.052 | -- | 22.2 | 1509 | -- | -- |
| 220.49 | 0.693 | 8.71 | -- | -- | -- | -- | -- | 0.23 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.43 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 14 |
| 5 | 62.54 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 13 |
| 8 | 62.57 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 11 |
| 47 | 62.78 | temperature | 30 | 1440 | < th | dose dependent | sin | 11 | NA |
| 53 | 62.80 | temperature | 15 | 1440 | > th | dose dependent | sin | 11 | NA |
| 147 | 63.23 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 156 | 63.27 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 841 | 65.80 | temperature | 30 | 1440 | < th | dose dependent | no | NA | NA |
| 885 | 65.91 | temperature | 15 | 1440 | > th | dose dependent | rect. | 11 | 20 |
| 953 | 66.08 | temperature | 30 | 1440 | < th | dose dependent | rect. | 23 | 23 |