BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0471900 Os08g0471900|AK069434
         (501 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os08g0471900  Zinc finger, ZPR1-type domain containing protein    991   0.0  

>Os08g0471900 Zinc finger, ZPR1-type domain containing protein
          Length = 501

 Score =  991 bits (2563), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 484/501 (96%), Positives = 484/501 (96%)

Query: 1   MASSGEEGRVVVDLRSXXXXXXXXXXXXXXXXXPLHEIESLCMRCGDNGTTRLLMTMIPH 60
           MASSGEEGRVVVDLRS                 PLHEIESLCMRCGDNGTTRLLMTMIPH
Sbjct: 1   MASSGEEGRVVVDLRSAAESAGGGGGDEEAHAAPLHEIESLCMRCGDNGTTRLLMTMIPH 60

Query: 61  FREVVLMAFECPHCGERNNEVQFAGQLQPKGCCYRLEVPRGQNEILNRQVVKSDSATIKI 120
           FREVVLMAFECPHCGERNNEVQFAGQLQPKGCCYRLEVPRGQNEILNRQVVKSDSATIKI
Sbjct: 61  FREVVLMAFECPHCGERNNEVQFAGQLQPKGCCYRLEVPRGQNEILNRQVVKSDSATIKI 120

Query: 121 PELDFEIPPEAQRGSLSTVEGIIMRAVDELQALQDERKKVDPQKAEAIDKFLAKLRSLGL 180
           PELDFEIPPEAQRGSLSTVEGIIMRAVDELQALQDERKKVDPQKAEAIDKFLAKLRSLGL
Sbjct: 121 PELDFEIPPEAQRGSLSTVEGIIMRAVDELQALQDERKKVDPQKAEAIDKFLAKLRSLGL 180

Query: 181 GEAAFTFVLDDPAGNSFIENQNAPSSDPLLSVRFYERMREQQAALGFLVEPSTEEPGDQP 240
           GEAAFTFVLDDPAGNSFIENQNAPSSDPLLSVRFYERMREQQAALGFLVEPSTEEPGDQP
Sbjct: 181 GEAAFTFVLDDPAGNSFIENQNAPSSDPLLSVRFYERMREQQAALGFLVEPSTEEPGDQP 240

Query: 241 VNHASTVEGNSEVLQEPHGSVGAVAGRRAIAQGNPDEVAAALCRYSAPEEVDTLPSTCGA 300
           VNHASTVEGNSEVLQEPHGSVGAVAGRRAIAQGNPDEVAAALCRYSAPEEVDTLPSTCGA
Sbjct: 241 VNHASTVEGNSEVLQEPHGSVGAVAGRRAIAQGNPDEVAAALCRYSAPEEVDTLPSTCGA 300

Query: 301 CGTECVTRFFATKIPYFREVIVMATTCDMCGYRNSELKPGGEIPAKGKKITLRVQNGKDL 360
           CGTECVTRFFATKIPYFREVIVMATTCDMCGYRNSELKPGGEIPAKGKKITLRVQNGKDL
Sbjct: 301 CGTECVTRFFATKIPYFREVIVMATTCDMCGYRNSELKPGGEIPAKGKKITLRVQNGKDL 360

Query: 361 TRDVIKSDSAGVKVPELELELASGTLGGIVTTVEGLIVKICEALQRVHGFHLGDSTLEWK 420
           TRDVIKSDSAGVKVPELELELASGTLGGIVTTVEGLIVKICEALQRVHGFHLGDSTLEWK
Sbjct: 361 TRDVIKSDSAGVKVPELELELASGTLGGIVTTVEGLIVKICEALQRVHGFHLGDSTLEWK 420

Query: 421 KKKWEDFNDRLSKLLSLQEPWTLIIDDGLAASFVAPATDSLEDDNQLTIEEYVRSWEQNE 480
           KKKWEDFNDRLSKLLSLQEPWTLIIDDGLAASFVAPATDSLEDDNQLTIEEYVRSWEQNE
Sbjct: 421 KKKWEDFNDRLSKLLSLQEPWTLIIDDGLAASFVAPATDSLEDDNQLTIEEYVRSWEQNE 480

Query: 481 ELGLNDMDTSSADAAYNTTNP 501
           ELGLNDMDTSSADAAYNTTNP
Sbjct: 481 ELGLNDMDTSSADAAYNTTNP 501



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.133    0.389 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,934,942
Number of extensions: 721680
Number of successful extensions: 1967
Number of sequences better than 1.0e-10: 1
Number of HSP's gapped: 1962
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 17,035,801
Length adjustment: 105
Effective length of query: 396
Effective length of database: 11,553,331
Effective search space: 4575119076
Effective search space used: 4575119076
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 158 (65.5 bits)