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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0459300

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Conserved hypothetical protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 6.56 (0.0727) R2 : 0.515
β1 : -4.66 (0.272) R2dD : 0.34 R2D : 0.165
β2 : 1.26 (0.179) R2dC : 0.0571 R2C : -0.02
β3 : 3.78 (0.23) R2dE : 0.327 R2E : 0.119
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.681 (0.155) R2dN8 : 0.0275 R2N8 : 0.00468
σ : 1.36
deviance : 850.35
__
_____
C
peak time of C : 12
E
wheather : temperature
threshold : 26.4
memory length : 1011
response mode : > th
dose dependency : dose dependent
G
type of G : sin
peak or start time of G : 7.8
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose dependent, type of G = sin)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
846.21 1.37 6.69 -5.67 1.26 4.27 -0.167 -5.14 -0.905 12.1 26.31 1055 8.45 --
850.34 1.36 6.56 -4.68 1.24 3.77 0.0965 -- -0.677 12.1 26.4 1012 7.79 --
845.95 1.35 6.67 -5.6 1.23 4.23 -- -4.91 -0.838 12 26.5 1058 8.32 --
850.35 1.36 6.56 -4.66 1.26 3.78 -- -- -0.681 12 26.4 1011 7.8 --
914.97 1.41 6.68 -5.59 -- 3.76 -- -4.78 -0.744 -- 27.26 1219 8.46 --
1327.42 1.71 6.6 -3.82 0.537 -- 2.88 -- -0.838 6.27 -- -- -- --
1338.5 1.71 6.6 -3.77 0.668 -- -- -- -0.841 8.63 -- -- -- --
919.37 1.41 6.56 -4.65 -- 3.26 -- -- -0.603 -- 27.3 1218 8.22 --
1398.9 1.74 6.42 -- 1.17 2.88 -- -- -0.11 11.3 27.12 1012 7.8 --
1363.65 1.73 6.61 -3.77 -- -- -- -- -0.836 -- -- -- -- --
1713.25 1.94 6.5 -- 0.66 -- -- -- -0.421 9.06 -- -- -- --
1456.57 1.78 6.4 -- -- 2.53 -- -- 0.0425 -- 28.6 1201 7.28 --
1738.33 1.95 6.52 -- -- -- -- -- -0.417 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 892.71 humidity 70 1440 < th dose independent rect. 18 13
2 893.32 humidity 70 1440 < th dose independent rect. 18 2
13 898.43 temperature 25 720 > th dose dependent rect. 17 15
14 899.73 humidity 70 720 > th dose independent rect. 17 9
17 902.56 temperature 25 720 > th dose dependent rect. 17 6
37 908.36 humidity 70 1440 > th dose independent rect. 18 13
43 909.11 humidity 70 1440 > th dose independent rect. 18 5
45 909.24 humidity 70 1440 > th dose independent rect. 18 3
48 909.36 humidity 80 720 < th dose dependent rect. 18 3
51 909.77 humidity 80 1440 < th dose dependent rect. 16 5
69 912.85 temperature 30 1440 > th dose dependent sin 14 NA
71 913.00 radiation 20 1440 > th dose independent rect. 16 15
82 914.28 temperature 30 1440 > th dose dependent rect. 14 5
97 914.72 humidity 70 720 > th dose independent sin 12 NA
135 916.84 temperature 30 1440 > th dose independent sin 13 NA
139 917.13 temperature 30 1440 < th dose independent sin 12 NA
164 918.88 temperature 30 1440 > th dose independent rect. 16 3
236 921.10 temperature 30 1440 < th dose independent rect. 16 11
242 921.22 temperature 30 1440 < th dose independent rect. 16 9
247 921.38 temperature 30 1440 < th dose independent rect. 16 15
299 922.68 temperature 30 1440 > th dose dependent rect. 15 1
343 923.56 temperature 30 1440 > th dose dependent no NA NA
445 924.43 radiation 20 1440 < th dose independent rect. 16 1
448 924.68 radiation 20 1440 < th dose independent rect. 16 11
452 924.94 radiation 20 1440 < th dose independent rect. 16 8
459 925.42 temperature 30 1440 > th dose dependent rect. 17 23
491 925.70 radiation 20 1440 < th dose independent rect. 16 15
494 925.74 radiation 20 1440 < th dose independent rect. 16 4
500 926.33 radiation 20 1440 > th dose independent rect. 16 1
530 927.63 temperature 30 1440 < th dose independent rect. 15 21
534 928.12 humidity 70 1440 < th dose independent sin 12 NA
542 929.07 humidity 70 1440 < th dose dependent rect. 16 15
559 929.30 radiation 20 1440 > th dose dependent rect. 16 16
561 929.49 temperature 30 1440 < th dose independent rect. 9 22
564 929.54 temperature 30 1440 < th dose independent rect. 9 18
565 929.54 temperature 30 1440 < th dose independent rect. 9 20
566 929.54 temperature 30 1440 > th dose dependent rect. 18 1
581 929.61 temperature 30 1440 < th dose independent rect. 9 16
592 929.81 temperature 30 1440 < th dose independent rect. 9 10
599 930.08 temperature 30 1440 < th dose independent rect. 15 19
605 930.34 temperature 30 1440 < th dose independent rect. 17 19
623 930.65 temperature 30 1440 > th dose independent rect. 15 21
642 931.20 temperature 30 1440 > th dose independent rect. 9 10
665 931.32 temperature 30 1440 < th dose independent rect. 17 22
783 933.36 temperature 30 1440 < th dose independent rect. 6 21
784 933.36 temperature 30 1440 < th dose independent rect. 6 23
787 933.43 temperature 30 1440 < th dose independent rect. 6 19
788 933.44 temperature 30 1440 < th dose independent rect. 2 23
790 933.45 temperature 30 1440 < th dose independent rect. 21 22
791 933.45 temperature 30 1440 < th dose independent rect. 4 23
796 933.48 temperature 30 1440 < th dose independent no NA NA
802 933.49 temperature 30 1440 < th dose independent rect. 24 23
838 933.57 temperature 30 1440 < th dose independent rect. 6 17
849 933.62 temperature 30 1440 < th dose independent rect. 6 13
852 933.63 temperature 30 1440 < th dose independent rect. 2 17
874 933.71 temperature 30 1440 < th dose independent rect. 4 15
907 934.03 temperature 30 1440 > th dose independent rect. 17 22
909 934.07 temperature 30 1440 > th dose independent rect. 17 19
988 935.98 temperature 30 1440 > th dose independent no NA NA