Os08g0458200
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Conserved hypothetical protein.
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Os08g0458200 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Conserved hypothetical protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = sin)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 204.63 | 0.672 | 10 | -0.836 | 1.74 | -1.86 | -0.473 | 6.51 | -0.0535 | 6.23 | 8.98 | 1328 | 12.9 | -- |
| 230.7 | 0.707 | 10 | -0.641 | 1.73 | -1.86 | 1.12 | -- | 0.0922 | 6.08 | 0.8719 | 1276 | 14.6 | -- |
| 204.64 | 0.666 | 10 | -0.845 | 1.77 | -1.85 | -- | 6.25 | -0.0471 | 6.2 | 8.069 | 1313 | 13.1 | -- |
| 231.06 | 0.708 | 10 | -0.657 | 1.84 | -2.28 | -- | -- | 0.0679 | 6.22 | 0.8039 | 1259 | 14.4 | -- |
| 309.73 | 0.82 | 10.1 | -0.691 | -- | -1.62 | -- | 5.4 | 0.0264 | -- | 8.848 | 1483 | 12.8 | -- |
| 271.4 | 0.772 | 9.98 | -0.278 | 1.35 | -- | 1.04 | -- | 0.28 | 5.97 | -- | -- | -- | -- |
| 274.07 | 0.775 | 9.98 | -0.269 | 1.35 | -- | -- | -- | 0.276 | 5.98 | -- | -- | -- | -- |
| 328.33 | 0.844 | 10 | -0.495 | -- | -1.83 | -- | -- | 0.163 | -- | 0.8218 | 1590 | 14.7 | -- |
| 241.41 | 0.724 | 10 | -- | 1.98 | -2.08 | -- | -- | 0.119 | 6.16 | 1.587 | 1212 | 14.2 | -- |
| 368.99 | 0.898 | 10 | -0.229 | -- | -- | -- | -- | 0.307 | -- | -- | -- | -- | -- |
| 275.97 | 0.777 | 9.98 | -- | 1.35 | -- | -- | -- | 0.306 | 5.99 | -- | -- | -- | -- |
| 279.31 | 0.778 | 10 | -- | -- | -1.33 | -- | -- | 0.304 | -- | 448.2 | 49 | 12.5 | -- |
| 370.37 | 0.898 | 10 | -- | -- | -- | -- | -- | 0.332 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 210.14 | radiation | 10 | 1440 | > th | dose independent | rect. | 11 | 4 |
| 2 | 210.90 | radiation | 20 | 1440 | < th | dose dependent | rect. | 14 | 1 |
| 4 | 212.56 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 7 |
| 5 | 212.57 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 5 |
| 9 | 212.90 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 18 |
| 11 | 212.94 | radiation | 10 | 1440 | > th | dose independent | rect. | 14 | 1 |
| 13 | 212.94 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 16 |
| 14 | 212.95 | radiation | 10 | 1440 | < th | dose dependent | rect. | 10 | 9 |
| 96 | 215.75 | radiation | 10 | 1440 | < th | dose dependent | sin | 18 | NA |
| 190 | 220.49 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 7 |
| 195 | 221.08 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 7 |
| 209 | 222.01 | radiation | 10 | 1440 | > th | dose independent | sin | 19 | NA |
| 216 | 222.23 | radiation | 1 | 1440 | > th | dose independent | rect. | 8 | 11 |
| 241 | 222.29 | radiation | 1 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 272 | 222.50 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 21 |
| 278 | 222.63 | radiation | 1 | 1440 | < th | dose independent | rect. | 8 | 11 |
| 301 | 223.02 | radiation | 1 | 1440 | < th | dose independent | rect. | 9 | 4 |
| 356 | 223.39 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 18 |
| 374 | 223.59 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 397 | 223.74 | humidity | 90 | 720 | > th | dose dependent | rect. | 20 | 4 |
| 456 | 224.62 | radiation | 1 | 1440 | < th | dose independent | sin | 19 | NA |
| 534 | 225.53 | humidity | 90 | 720 | > th | dose dependent | rect. | 8 | 17 |
| 700 | 227.93 | radiation | 1 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 747 | 228.37 | radiation | 1 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 759 | 228.69 | radiation | 20 | 1440 | < th | dose independent | rect. | 12 | 3 |
| 761 | 228.75 | humidity | 90 | 270 | > th | dose dependent | rect. | 5 | 21 |
| 763 | 228.78 | humidity | 80 | 1440 | > th | dose independent | rect. | 12 | 1 |
| 767 | 228.86 | humidity | 80 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 789 | 229.05 | humidity | 80 | 1440 | > th | dose dependent | rect. | 11 | 4 |
| 837 | 229.91 | radiation | 1 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 882 | 230.32 | radiation | 10 | 1440 | > th | dose independent | rect. | 17 | 23 |
| 936 | 230.65 | radiation | 10 | 1440 | > th | dose independent | no | NA | NA |